View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_2 (Length: 792)
Name: NF1295_low_2
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 361 - 782
Target Start/End: Original strand, 19344497 - 19344918
Alignment:
| Q |
361 |
ttgttaatttggggcagctactgtgtcttgcaactgattgtcgtcccagagaattctttgcatttgtatttcaagaaaggaagagtgggggacgatccaa |
460 |
Q |
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| T |
19344497 |
ttgttaatttggggcagctactgtgtcatgcaactgattgtcgtcccagagaattctttgcatttgtatttcaagaaaggaagagtgggggacgatccaa |
19344596 |
T |
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| Q |
461 |
acgcggaggagcgactagaagagtgcgagaatgtggacaatgctatcaaagagtttgtgaggctctttgaggaaataacaggaaatgagtttgaatcatg |
560 |
Q |
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| T |
19344597 |
gcgcggaggagcgactagaagagtgcgagaatgtggacaatgctatcaaagagtttgtgaggctctttgaggaaataacaggaaatgagtttgaatcatg |
19344696 |
T |
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| Q |
561 |
ggaaagagataagaaatttcaaaagaaaccactgaagttttaccccattgacatggtacatatatattacttcccataaatgatgatttatcactcctgt |
660 |
Q |
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| T |
19344697 |
ggaaagagagaagaaatttcaaaagaaaccactgaagttttaccccattgacatggtacatatatattacttcccataattgatgatttatcactcctgt |
19344796 |
T |
|
| Q |
661 |
ttttggttaaacatatatagcattatggcattgaataggatgatggagttgaagttagacacggggcattaggtcttcgacagctggggatagcagcgac |
760 |
Q |
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| T |
19344797 |
ttttggttaaacatatatagcattatggcattgaataggatgatggagttgaagttagacacggggcattaggtcttcggcagctggggatagcagcgac |
19344896 |
T |
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| Q |
761 |
acactgtaaacttgagcctatg |
782 |
Q |
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| T |
19344897 |
acactgtaaacttgagcctatg |
19344918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 80 - 362
Target Start/End: Original strand, 19344187 - 19344469
Alignment:
| Q |
80 |
tcattattttatagaagaaatacaggtcccttcccttgtgactgtttgataaaatttggtgattgttaacagctcaagctttatgggaagagaggggtct |
179 |
Q |
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| T |
19344187 |
tcattattttatagaagaaatataggtcccttcccttttgactgtttgataaaatttggtgattgttaacagctcaagctttatgggaagagaggggtct |
19344286 |
T |
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| Q |
180 |
acaaagataccaaattgcatgagcaagatggaaagatatttgaaaaagatgggatattatacaactgtgccttctctgtttgtgaccaagggagaaaact |
279 |
Q |
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| T |
19344287 |
acaaagataccaaattgcatgagcaagatggaaagatatttgaaaaagatgggatattatacaactgtgccttctccctttgtgaccaagggagaaaact |
19344386 |
T |
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| Q |
280 |
taatgagtaataatactaacaagatcaattgcagctttagtccttattgacatttattttttggttacaaccttattgacatt |
362 |
Q |
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| T |
19344387 |
taatgagtaataatactaacaagatcaattgcagctttagtccttattgacatttgttttttggttacaaccttattgacatt |
19344469 |
T |
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