View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_20 (Length: 419)
Name: NF1295_low_20
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 1817584 - 1817205
Alignment:
| Q |
13 |
aatatcacaattgaagcatttaaattcccaacttctacactatctaaggaaaattcttgtagctattcctttattgcaaaacaaggatcctataaatttt |
112 |
Q |
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| T |
1817584 |
aatatcacaattgaagcatttaaattcccaacttctaccctatctaaggaaaattcttgtagctattcctttattgcaaaacaaggatcctataaatttt |
1817485 |
T |
|
| Q |
113 |
ctgtagaccatataaataatctacctaatgaaactttccccttggttattaattgggctattacaaatgaatcatgtcaaatagctcacactacaaatag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1817484 |
ctgtagaccatataaataatctacctaatgaaactttccccttggttattaattgggctattacaaatgaatcatgtcaaatagctcacactacaaatag |
1817385 |
T |
|
| Q |
213 |
ctacgcctgcaagaaaaatagtgaatgtgtcgatgacgatccagattatgatggttacagatgcaagtgtttacaaggttttgaaggaaatccatacctt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1817384 |
ctacgcctgcaagaaaaatagtgaatgtgtcgatgacgatccagattatgatggttacagatgcaagtgtttacaaggttttgaaggaaatccatacctt |
1817285 |
T |
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| Q |
313 |
cctggaggctgcacaggtaacaaacaaagcataatatcgtaccactgtttttgtttttgcagtttaattaattgattgtg |
392 |
Q |
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| T |
1817284 |
cctggaggctgcacaggtaacaaacaaagcataatatcgtaccactgtttttgtttttgcagtttaattaattgattgtg |
1817205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 1855607 - 1855929
Alignment:
| Q |
13 |
aatatcacaattgaagcatttaaattcccaacttctacactatctaaggaaaattcttgtagctattcctttattgcaaaacaaggatcctataaatttt |
112 |
Q |
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|||||||| || |||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1855607 |
aatatcaccatacaagcatttaaattctcaccttctacactatctatggaaaattcttgtagctattcctttattgcaaaacaaggatcctataattttt |
1855706 |
T |
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| Q |
113 |
ctgtagaccatataaataatctacctaatgaaactttccccttggttattaattgggctattacaaatgaatcatgtcaaatagctcacactacaaatag |
212 |
Q |
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||||||| ||||| || || || ||| || | |||||||| ||||| ||||||||| | |||||||||||||||||| |||||| || ||||||||||| |
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| T |
1855707 |
ctgtagaacatattaagaaactgccttataacactttccctatggttgttaattgggttgttacaaatgaatcatgtcgaatagcccaaactacaaatag |
1855806 |
T |
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| Q |
213 |
ctacgcctgcaagaaaaatagtgaatgtgtcgatgacgatccagattatgatggttacagatgcaagtgtttacaaggttttgaaggaaatccatacctt |
312 |
Q |
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||| ||||||||| |||||||||||||||| ||| | ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
1855807 |
ctatgcctgcaaggaaaatagtgaatgtgttgataaagattcagattatgacggttacagatgcaagtgtttggcaggttttgaaggaaatccatacgtt |
1855906 |
T |
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| Q |
313 |
cctggaggctgcacaggtaacaa |
335 |
Q |
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|| |||||||| | ||||||||| |
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| T |
1855907 |
cccggaggctgtagaggtaacaa |
1855929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 37567088 - 37567171
Alignment:
| Q |
13 |
aatatcacaattgaagcatttaaattcccaacttctacactatctaaggaaaattcttgtagctattcctttattgcaaaacaa |
96 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37567088 |
aatatcacaattgaaacatttaaattcccaacttctacactgtctatggaaaattcttgtagctattcctttattgcaaaacaa |
37567171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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