View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_21 (Length: 411)
Name: NF1295_low_21
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 53043591 - 53043210
Alignment:
| Q |
1 |
aagcaacttcaggctaaaatggtaagtttactacctttttatattggtaaacaacataagtttacagaaaatggggaattaaaacaatgaaagaggagaa |
100 |
Q |
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| T |
53043591 |
aagcaacttcaggctaaaatggtaagtttactacctttttatattggtaaacaacataagtttacagaaaatggggaattaaaacaatgaaagaggagaa |
53043492 |
T |
|
| Q |
101 |
ctataaacacacttaaacattaatgagttgcatccaaatatcattgctaataagtaaaggaatatattgacagtgtaaatgaatatatcaactgaaaaac |
200 |
Q |
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| T |
53043491 |
ctataaacacacttaaacattaatgagttgcatccaaatatcattgctaataagtaaaggaatatattgacagtgtaaatgaatatatcaactgaaaaac |
53043392 |
T |
|
| Q |
201 |
taaaagaacatattaccaaagcaactttggaggatgagaatcaattgtcttatcatcatcactgactgttttacgcggaagaggagcaaagccaccaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53043391 |
taaaagaacatattaccaaagcaactttggaggatgagaatcaattgtcttatcatcatcactgactgttttacgcggaagaggagcaaagccaccaaac |
53043292 |
T |
|
| Q |
301 |
aaaccccagaattctccagattcagagtcagccatcaaccttccatcctcttcatggaaattcaaatgtaaacatccgatac |
382 |
Q |
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| T |
53043291 |
aaaccccagaattctccagattcagagtcagccatcaaccttccatcctcttcatggaaattcaaatgtaaacatccgatac |
53043210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 249 - 365
Target Start/End: Original strand, 15964539 - 15964655
Alignment:
| Q |
249 |
cttatcatcatcactgactgttttacgcggaagaggagcaaagccaccaaacaaaccccagaattctccagattcagagtcagccatcaaccttccatcc |
348 |
Q |
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| T |
15964539 |
cttatcattatcactggctgcttttcgtggaagaggagcaaatccgccaaagaaaccccagaattccccagtttcaggatcagccattaactttccatcc |
15964638 |
T |
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| Q |
349 |
tcttcatggaaattcaa |
365 |
Q |
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| T |
15964639 |
tctgcttggaagttcaa |
15964655 |
T |
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