View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_23 (Length: 387)
Name: NF1295_low_23
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 93 - 387
Target Start/End: Complemental strand, 37221703 - 37221420
Alignment:
| Q |
93 |
caacactactcatattcctatcttcatccttagcaacaaacacactgaatctgaaaaaattaacaacaccattcatattcatctcttcttctttagcaca |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37221703 |
caacactactcatattcctatcttcatccttagcaacaaacaca-----------aaaattaacaacaccattcatattcatctcttattctttagcaca |
37221615 |
T |
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| Q |
193 |
aaaaattaacaacatcacaactttctccaatcatcaacacccaccaccacttgtgttcctctccttttcacccacacccacttatcttcgatcccttaac |
292 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221614 |
aaaaattaacaacatcacaactttctcccatcatcaacacccaccaccacttgtgttcctctccttttcacccacacccacttatcttcgatcccttaac |
37221515 |
T |
|
| Q |
293 |
actacttcttcaccattttcacccacaaaaaatcctcgtaaaaggcattgctgcaacacggtcaagaacataatatccatcatgcacaccatatc |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |
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| T |
37221514 |
actacttcttcaccattttcacccacaaaaaatcctcgtaaaaggcattgctgcagcacggtcaagaacataatatccatcatccgcaccatatc |
37221420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 24823177 - 24823311
Alignment:
| Q |
94 |
aacactactcatattcctatcttcatccttagcaacaaacacactgaatctgaaaaaattaacaacaccattcatattcatctcttcttctttagcacaa |
193 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| || || || ||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
24823177 |
aacactactcatattcctctcttcatccttagcaacaaacactctcaacctaaaaaaatta-caacaccattcatattcatctcttcttccttagcacaa |
24823275 |
T |
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| Q |
194 |
aaaattaacaacatcacaactttctccaatcatcaa |
229 |
Q |
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|||||||| |||||||||||||||||| |||||||| |
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| T |
24823276 |
aaaattaaaaacatcacaactttctcccatcatcaa |
24823311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 13813309 - 13813446
Alignment:
| Q |
95 |
acactactcatattcctatcttcatccttagcaacaaacacactgaatc--tgaaaaaattaacaacaccattcatattcatctcttcttctttagcaca |
192 |
Q |
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||||||||||||||||| ||||||||||| ||| ||||| | ||||| | || |||||||||||||| ||||| | |||||||||||||| |||||||| |
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| T |
13813309 |
acactactcatattcctctcttcatccttggcagcaaactctctgaacccctggaaaaattaacaacaacattcgtgttcatctcttcttccttagcaca |
13813408 |
T |
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| Q |
193 |
aaaaattaacaacatcacaactttctccaatcatcaac |
230 |
Q |
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|||| |||||||||||||| ||||||| ||||||||| |
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| T |
13813409 |
aaaaggtaacaacatcacaaatttctcccatcatcaac |
13813446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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