View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_29 (Length: 319)
Name: NF1295_low_29
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 25883649 - 25883788
Alignment:
| Q |
84 |
cacagacactaacttcaaatccaacttcaccttttccacctccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacc |
183 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883649 |
cacaaacactaacttcaaatccaacttcaccttttccacccccttctaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacc |
25883748 |
T |
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| Q |
184 |
tttctttggtttcacaaacagcaacacaggatgtttccca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
25883749 |
tttctttggtttcacaaacagcaacacaggatgtttccca |
25883788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 25961443 - 25961304
Alignment:
| Q |
84 |
cacagacactaacttcaaatccaacttcaccttttccacctccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacc |
183 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961443 |
cacaaacactaacttcaaatccaacttcaccttttccacccccttctaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacc |
25961344 |
T |
|
| Q |
184 |
tttctttggtttcacaaacagcaacacaggatgtttccca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
25961343 |
tttctttggtttcacaaacagcaacacaggatgtttccca |
25961304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 25923826 - 25923965
Alignment:
| Q |
84 |
cacagacactaacttcaaatccaacttcaccttttccacctccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacc |
183 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25923826 |
cacaaacactaacttcaaatccaacttcaccttttcctcctccttctaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacc |
25923925 |
T |
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| Q |
184 |
tttctttggtttcacaaacagcaacacaggatgtttccca |
223 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
25923926 |
tttctttggcttcacaaacagcaacacaggatgtttccca |
25923965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 25904983 - 25905122
Alignment:
| Q |
84 |
cacagacactaacttcaaatccaacttcaccttttccacctccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacc |
183 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25904983 |
cacaaacactaacttcaaatccaacttcaccctttccacctccttccaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacc |
25905082 |
T |
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| Q |
184 |
tttctttggtttcacaaacagcaacacaggatgtttccca |
223 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||| |
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| T |
25905083 |
tttctttggcttcacaaacagcaacacaggatgcttccca |
25905122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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