View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_31 (Length: 308)
Name: NF1295_low_31
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 300
Target Start/End: Complemental strand, 34478368 - 34478102
Alignment:
| Q |
30 |
gtaaccacatatcaccttcaatatgaagtgccggtgctgcatatgtttactttttacgcaagaatctgctattttaattaatcataacttttcaaatata |
129 |
Q |
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| T |
34478368 |
gtaaccacataccaccttcaatatgaagtgccggtgctgcatatgtttactttttacgcaagaatccgctattttaat----cataacttttcaaatata |
34478273 |
T |
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| Q |
130 |
atatattgataaaattctaaaccaatcttacaattagaatgaaattataaaactgacaacaaaaagaaggaacaaaacataccttttgatgagtggaagc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34478272 |
atatattgataaaattctaaaccaatcttacaattagaatgaaattataaaactgacaacaaaaagaaggaacaaaacataccttttgatgagtggaagc |
34478173 |
T |
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| Q |
230 |
cacaagaccacgtaatgttccaaggtgaccatttattctctcccttcttctcctctctgcttccctatgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34478172 |
cacaagaccacgtaatgttccaaggtgaccatttattctctcccttcttctcctctctgcttccctatgat |
34478102 |
T |
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