View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_41 (Length: 261)
Name: NF1295_low_41
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_41 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 50246552 - 50246620
Alignment:
| Q |
193 |
ttctatatggtataggatcatcttgatgacaagtatgaatttgactccaattgggatcccaagaacaaa |
261 |
Q |
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| T |
50246552 |
ttctatatggtataggatcatcttgatgacaagtatgaatttgactccaattgggatcccaagaacaaa |
50246620 |
T |
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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 50246456 - 50246509
Alignment:
| Q |
97 |
agcagagacaaaccaaatataaatttataagatatcaccaacattatccacgag |
150 |
Q |
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| T |
50246456 |
agcacagacaaaccaaatatagatttataagatatcaccgacattatccacgag |
50246509 |
T |
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