View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1295_low_44 (Length: 251)
Name: NF1295_low_44
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_44 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 40281035 - 40280813
Alignment:
| Q |
29 |
actgactgcaggaatccaaagacattgctaatgttgacgcggtctcttttattgcagttgggaaatccacttctagaatatgccactgacttcaattcaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40281035 |
actgactgcaggaatccaaagacattgctaatgttgacgcggtctcttttattgcagttgggaaatccacttctagaatatgccactgacttcaattcaa |
40280936 |
T |
|
| Q |
129 |
gggctgagttcttctggtctcatggattgatatcagattcaacttacaaaatgttcaccgcaggctgcaattattcgcagtatgtaagtgagtactatag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40280935 |
gggctgagttcttctggtctcatggattgatatcagattcaacttacaaaatgttcaccgcaggctgcaattattcgcagtatgtaagtgagtactatag |
40280836 |
T |
|
| Q |
229 |
aaactccatttccctgctttgtt |
251 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40280835 |
aaactccatttccctgctttgtt |
40280813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 45129130 - 45129023
Alignment:
| Q |
79 |
attgcagttgggaaatccacttctagaatatgccactgacttcaattcaagggctgagttcttctggtctcatggattgatatcagattcaacttacaaa |
178 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||| | ||||||||| |||||||||| |
|
|
| T |
45129130 |
attgcagttgggaaatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgcaacttacaac |
45129031 |
T |
|
| Q |
179 |
atgttcac |
186 |
Q |
| |
|
|||||||| |
|
|
| T |
45129030 |
atgttcac |
45129023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 6632346 - 6632252
Alignment:
| Q |
92 |
aatccacttctagaatatgccactgacttcaattcaagggctgagttcttctggtctcatggattgatatcagattcaacttacaaaatgttcac |
186 |
Q |
| |
|
|||||| || |||||| ||| || || || |||||||| ||||||||||| ||||||||||||||||| ||||| | ||| | ||||||||||| |
|
|
| T |
6632346 |
aatccagttttagaatttgcaacagattttaattcaagagctgagttcttttggtctcatggattgatctcagacttaacatttaaaatgttcac |
6632252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 46131983 - 46132065
Alignment:
| Q |
80 |
ttgcagttgggaaatccacttctagaatatgccactgacttcaattcaagggctgagttcttctggtctcatggattgatatc |
162 |
Q |
| |
|
|||||| |||| ||||| ||||| |||| | ||||||| | |||||| |||||||| || || ||||| |||||||||||||| |
|
|
| T |
46131983 |
ttgcagatgggcaatcctcttctggaatttaccactgattacaattccagggctgaatttttatggtcccatggattgatatc |
46132065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University