View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1295_low_5 (Length: 635)

Name: NF1295_low_5
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1295_low_5
NF1295_low_5
[»] chr7 (40 HSPs)
chr7 (5-606)||(29037311-29037915)
chr7 (250-606)||(29017447-29017803)
chr7 (1-136)||(18249994-18250132)
chr7 (2-137)||(33898944-33899082)
chr7 (1-87)||(10618927-10619013)
chr7 (1-137)||(33935514-33935653)
chr7 (1-137)||(46573612-46573751)
chr7 (1-76)||(7447882-7447957)
chr7 (1-137)||(17025361-17025500)
chr7 (1-137)||(18740218-18740357)
chr7 (1-125)||(21760595-21760722)
chr7 (1-137)||(49034224-49034363)
chr7 (1-72)||(26719821-26719892)
chr7 (2-108)||(32356968-32357077)
chr7 (27-137)||(35543556-35543669)
chr7 (1-137)||(44421901-44422041)
chr7 (5-137)||(33124705-33124840)
chr7 (1-77)||(36472445-36472521)
chr7 (1-95)||(17608718-17608812)
chr7 (1-87)||(22075069-22075155)
chr7 (1-137)||(222226-222365)
chr7 (1-137)||(23226999-23227138)
chr7 (1-137)||(23236152-23236291)
chr7 (1-86)||(45055734-45055819)
chr7 (1-86)||(45176251-45176336)
chr7 (8-77)||(48634460-48634529)
chr7 (1-86)||(11595850-11595935)
chr7 (1-141)||(37334284-37334427)
chr7 (26-138)||(37401565-37401680)
chr7 (1-108)||(31491821-31491931)
chr7 (50-86)||(33473046-33473082)
chr7 (1-136)||(36927005-36927143)
chr7 (1-77)||(48505851-48505927)
chr7 (2-72)||(37239840-37239910)
chr7 (1-86)||(40480104-40480190)
chr7 (1-137)||(5776130-5776269)
chr7 (1-137)||(5794936-5795075)
chr7 (1-137)||(33171534-33171673)
chr7 (1-137)||(43052878-43053017)
chr7 (26-86)||(37106857-37106917)
[»] chr3 (28 HSPs)
chr3 (1-137)||(12710703-12710842)
chr3 (1-137)||(9505121-9505260)
chr3 (1-105)||(39942832-39942939)
chr3 (1-87)||(52199430-52199516)
chr3 (1-136)||(26049541-26049679)
chr3 (1-137)||(30662131-30662270)
chr3 (1-111)||(20550228-20550341)
chr3 (2-76)||(39135356-39135430)
chr3 (2-76)||(46293277-46293351)
chr3 (1-86)||(5418679-5418764)
chr3 (26-87)||(33438784-33438845)
chr3 (1-137)||(40943562-40943701)
chr3 (26-137)||(54393443-54393557)
chr3 (4-106)||(26136337-26136442)
chr3 (1-72)||(54432259-54432330)
chr3 (18-79)||(25253720-25253781)
chr3 (19-76)||(39469595-39469652)
chr3 (1-56)||(52199390-52199445)
chr3 (1-76)||(52934813-52934888)
chr3 (1-137)||(19560774-19560913)
chr3 (19-86)||(18074595-18074662)
chr3 (27-112)||(15822374-15822462)
chr3 (26-84)||(23206364-23206422)
chr3 (1-87)||(28242584-28242670)
chr3 (17-87)||(33691969-33692039)
chr3 (30-79)||(1674659-1674708)
chr3 (1-137)||(32689170-32689309)
chr3 (1-77)||(41609889-41609965)
[»] chr4 (41 HSPs)
chr4 (1-131)||(51995079-51995212)
chr4 (1-137)||(22184504-22184643)
chr4 (1-131)||(12673034-12673167)
chr4 (1-137)||(51407949-51408088)
chr4 (1-137)||(55891985-55892124)
chr4 (27-138)||(80524-80638)
chr4 (1-72)||(25134575-25134646)
chr4 (1-137)||(28265673-28265809)
chr4 (1-76)||(40797831-40797906)
chr4 (1-87)||(52813602-52813688)
chr4 (1-137)||(1803499-1803633)
chr4 (1-109)||(13455702-13455813)
chr4 (1-112)||(19455183-19455297)
chr4 (26-81)||(48339158-48339213)
chr4 (1-142)||(24007898-24008042)
chr4 (1-87)||(56224146-56224232)
chr4 (1-86)||(7505530-7505615)
chr4 (1-137)||(11055226-11055365)
chr4 (1-137)||(26632937-26633076)
chr4 (26-87)||(36156347-36156408)
chr4 (1-138)||(44378251-44378379)
chr4 (1-137)||(50606009-50606148)
chr4 (26-137)||(50146918-50147032)
chr4 (26-73)||(6866170-6866217)
chr4 (21-76)||(9469798-9469853)
chr4 (1-76)||(36543782-36543857)
chr4 (1-111)||(48151152-48151265)
chr4 (1-137)||(12789552-12789691)
chr4 (1-86)||(52706218-52706303)
chr4 (1-77)||(19852979-19853055)
chr4 (1-76)||(22721329-22721403)
chr4 (18-77)||(34718157-34718216)
chr4 (27-137)||(49405635-49405748)
chr4 (26-87)||(13761825-13761886)
chr4 (1-137)||(48977577-48977716)
chr4 (1-137)||(53369873-53370012)
chr4 (42-125)||(9874220-9874306)
chr4 (19-87)||(15697136-15697204)
chr4 (1-77)||(21441582-21441658)
chr4 (31-87)||(27891418-27891473)
chr4 (2-66)||(52733775-52733838)
[»] chr1 (43 HSPs)
chr1 (1-137)||(28006351-28006490)
chr1 (1-138)||(50447342-50447482)
chr1 (1-139)||(24575910-24576051)
chr1 (1-137)||(39802767-39802906)
chr1 (1-111)||(5204495-5204608)
chr1 (1-86)||(27076569-27076654)
chr1 (2-138)||(47983257-47983396)
chr1 (26-137)||(35810744-35810858)
chr1 (31-137)||(12224575-12224684)
chr1 (1-131)||(40159636-40159769)
chr1 (20-137)||(21680656-21680776)
chr1 (1-87)||(31869595-31869681)
chr1 (26-87)||(14578638-14578699)
chr1 (1-137)||(29677519-29677658)
chr1 (1-137)||(38061178-38061317)
chr1 (1-77)||(23915660-23915736)
chr1 (26-74)||(46265010-46265058)
chr1 (28-138)||(25124884-25124997)
chr1 (7-137)||(44596524-44596657)
chr1 (33-137)||(6413272-6413379)
chr1 (1-137)||(15306494-15306633)
chr1 (1-86)||(43087520-43087605)
chr1 (26-137)||(7016075-7016189)
chr1 (26-74)||(42916180-42916228)
chr1 (26-137)||(45581008-45581122)
chr1 (20-111)||(45653457-45653551)
chr1 (5-72)||(15257239-15257306)
chr1 (1-138)||(7995972-7996112)
chr1 (1-86)||(19508529-19508614)
chr1 (1-137)||(24469817-24469956)
chr1 (1-137)||(32179859-32179998)
chr1 (1-86)||(48575134-48575219)
chr1 (26-74)||(7596419-7596467)
chr1 (26-74)||(15662975-15663023)
chr1 (26-87)||(42937100-42937161)
chr1 (1-137)||(47602862-47603001)
chr1 (2-137)||(7702837-7702975)
chr1 (2-86)||(14796590-14796674)
chr1 (2-86)||(14805464-14805548)
chr1 (26-66)||(15014341-15014381)
chr1 (19-87)||(20347685-20347753)
chr1 (19-67)||(30251443-30251491)
chr1 (1-77)||(37441249-37441325)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-138)||(21089-21228)
[»] chr5 (27 HSPs)
chr5 (1-138)||(27450580-27450720)
chr5 (1-137)||(3801364-3801503)
chr5 (1-137)||(34719657-34719796)
chr5 (1-137)||(19716184-19716318)
chr5 (1-137)||(27196078-27196217)
chr5 (1-137)||(39407407-39407546)
chr5 (1-87)||(1840740-1840826)
chr5 (1-137)||(10493986-10494125)
chr5 (1-86)||(41783326-41783411)
chr5 (2-137)||(26298313-26298451)
chr5 (1-76)||(38522925-38523000)
chr5 (1-87)||(19282167-19282253)
chr5 (1-134)||(26299848-26299984)
chr5 (39-137)||(32945021-32945122)
chr5 (3-137)||(34724754-34724891)
chr5 (1-138)||(27906099-27906239)
chr5 (26-67)||(2676042-2676083)
chr5 (1-86)||(14500760-14500845)
chr5 (1-86)||(26218048-26218133)
chr5 (26-74)||(20190650-20190698)
chr5 (2-137)||(34857349-34857487)
chr5 (27-77)||(1225378-1225428)
chr5 (4-86)||(30660961-30661043)
chr5 (1-86)||(11136061-11136145)
chr5 (27-72)||(24202729-24202774)
chr5 (1-86)||(34723707-34723792)
chr5 (1-66)||(39409141-39409206)
[»] chr6 (12 HSPs)
chr6 (1-137)||(3081718-3081857)
chr6 (1-137)||(13312023-13312164)
chr6 (1-111)||(6999268-6999381)
chr6 (1-137)||(4441301-4441440)
chr6 (18-137)||(1501866-1501988)
chr6 (27-137)||(17441185-17441298)
chr6 (26-87)||(10961849-10961910)
chr6 (26-137)||(5640252-5640366)
chr6 (1-137)||(7437305-7437444)
chr6 (26-74)||(9950826-9950874)
chr6 (1-137)||(10346722-10346861)
chr6 (26-87)||(27984943-27985004)
[»] chr2 (20 HSPs)
chr2 (5-137)||(3409188-3409323)
chr2 (1-134)||(44740486-44740622)
chr2 (26-138)||(27464571-27464686)
chr2 (1-86)||(11007026-11007111)
chr2 (1-137)||(40458922-40459061)
chr2 (2-87)||(2578081-2578166)
chr2 (1-86)||(2647028-2647113)
chr2 (1-86)||(34116227-34116312)
chr2 (2-77)||(24844729-24844804)
chr2 (44-137)||(29806950-29807046)
chr2 (1-137)||(27634672-27634811)
chr2 (26-67)||(38409644-38409685)
chr2 (1-76)||(1094458-1094533)
chr2 (28-87)||(27902492-27902551)
chr2 (29-87)||(20203767-20203825)
chr2 (26-111)||(41332257-41332345)
chr2 (1-86)||(2328345-2328430)
chr2 (1-137)||(33831496-33831635)
chr2 (1-105)||(34064706-34064813)
chr2 (1-77)||(26436355-26436431)
[»] chr8 (11 HSPs)
chr8 (1-137)||(3307935-3308074)
chr8 (37-125)||(43384831-43384922)
chr8 (1-108)||(1091728-1091838)
chr8 (1-74)||(27189148-27189221)
chr8 (1-137)||(453484-453623)
chr8 (1-86)||(34655036-34655121)
chr8 (1-86)||(43967511-43967596)
chr8 (254-459)||(11716003-11716208)
chr8 (26-76)||(34516164-34516214)
chr8 (26-67)||(23181181-23181222)
chr8 (1-77)||(11161573-11161649)
[»] scaffold0204 (1 HSPs)
scaffold0204 (26-81)||(26680-26735)
[»] scaffold0444 (1 HSPs)
scaffold0444 (1-138)||(778-906)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-125)||(51314-51441)
[»] scaffold0224 (1 HSPs)
scaffold0224 (26-74)||(7374-7422)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-125)||(96281-96408)
[»] scaffold0022 (1 HSPs)
scaffold0022 (26-76)||(124545-124595)
[»] scaffold0260 (1 HSPs)
scaffold0260 (19-87)||(10008-10076)


Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 5 - 606
Target Start/End: Complemental strand, 29037915 - 29037311
Alignment:
Q  5 ttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaa 101  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||   ||||||| |||| ||    
T  29037915 ttcaactcatttgtttaacggacttaattttcaactcaagttcgtctcatttggttcatgaacaaagttcagcaaattaattaccgaatcgagtctcaaa 29037816  T
Q  102 ctattttcgaactggtacggttcactgccagccctatgcacgcgccatcactttacattttaaagcttcaacaaaatcgtgtataccaccttgttaaact 201  Q
    |||||||||| ||||||||||| ||||| || ||||| ||| |||||||||  |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  29037815 ctattttcgagctggtacggttgactgctagtcctatacactcgccatcacgctacattttaatgcttcaacaaaatcgtgtatagcaccttgttaaact 29037716  T
Q  202 tattaacattccaaaaatccacattaataagtagtaatttaatataggagacttaccaaccccaataggaccaatcaggaaagacaatgtcaagagcttc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29037715 tattaacattccaaaaatccacattaataagtagtaatttaatataggagacttaccaaccccaataggaccaatcaggaaagacaatgtcaagagcttc 29037616  T
Q  302 attctttccacaataactaaaaataggtggtggtgtcacagcttctggtccttcatatcnnnnnnnatccaccacagctctatcaccagtctcaaacaat 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||    
T  29037615 attctttccacaataactaaaaataggtggtggtgtcacagcttctggtccttcgtatctttttttatccaccacagctctatcaccagtctcaaacaat 29037516  T
Q  402 agctccaaatctggtactctcccagggtacaaccttaaaagttgcactattccccatacagtaaatgtagcccttgtttgaaatgaatctccataagttt 501  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29037515 agctccaaatctggtactctcccagggtacaaccttaaaagttgtactattccccatacagtaaatgtagcccttgtttgaaatgaatctccataagttt 29037416  T
Q  502 ctacataaacttttccttgtttaatcacaattctaagctgtgaaatgttttctccactatccaccatttcccttgtgattcctgtactcttccatggttc 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29037415 ctacataaacttttccttgtttaatcacaattctaagctgtgaaatgttttctccactatccaccatttcccttgtgattcctgtactcttccatggttc 29037316  T
Q  602 caaat 606  Q
    |||||    
T  29037315 caaat 29037311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 250 - 606
Target Start/End: Complemental strand, 29017803 - 29017447
Alignment:
Q  250 agacttaccaaccccaataggaccaatcaggaaagacaatgtcaagagcttcattctttccacaataactaaaaataggtggtggtgtcacagcttctgg 349  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| ||||||||| || ||     
T  29017803 agacttaccaaccccaaaaggaccaatcaggaaagacaatatcaagagcatcattttgtccacaataactaaaaataggtggtagtgtcacagattgtga 29017704  T
Q  350 tccttcatatcnnnnnnnatccaccacagctctatcaccagtctcaaacaatagctccaaatctggtactctcccagggtacaaccttaaaagttgcact 449  Q
    ||||| | |||       |||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29017703 tccttgaaatctttttttatccaatacagttctatcaccagtctcaaacaatagctccaaatctggtactctcccagggtacaaccttaaaagttgtact 29017604  T
Q  450 attccccatacagtaaatgtagcccttgtttgaaatgaatctccataagtttctacataaacttttccttgtttaatcacaattctaagctgtgaaatgt 549  Q
    |||||||||||||| ||   | |||||||||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||||||||||||||||| |    
T  29017603 attccccatacagtgaacaaatcccttgtttgaaatgaatctgcatatgtttctacataagcttttccttttttaatcacaattctaagctgtgaaatat 29017504  T
Q  550 tttctccactatccaccatttcccttgtgattcctgtactcttccatggttccaaat 606  Q
    ||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  29017503 tttttccactttccaccgtttcccttgtgattcctgtactcttccatggttccaaat 29017447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 18250132 - 18249994
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | |||||||  | ||||||||| |||||||||| ||||||| |||||||||| ||||||||| ||| ||||   ||||||| |||    
T  18250132 caagttcaactcatttatttaacgagcataattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtct 18250033  T
Q  98 cgaactattttcgaactggtacggttcactgccagccct 136  Q
     |||||||||||||  |||| ||||||| ||||||||||    
T  18250032 tgaactattttcgagttggttcggttcattgccagccct 18249994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 33899082 - 33898944
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctc 98  Q
    ||||||||||||| | |||||||  ||||||||||| |||||||||| ||||||| |||||||||| |||| |||  || |||||   ||||||||| ||    
T  33899082 aagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaactaattctcgaatcgaatatc 33898983  T
Q  99 gaactattttcgaactggtacggttcactgccagcccta 137  Q
    |||||||||||||  |||| ||||||| || ||||||||    
T  33898982 gaactattttcgagttggttcggttcattgtcagcccta 33898944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 10618927 - 10619013
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||| ||||| | ||||||| ||||||||||||||||||||||  |||||||||||||||||| ||||||||| | |||||||    
T  10618927 caagttcagctcatttatttaacgaacttaattttcagctcaagttcagctcatttagttcatgaaccaagttcaacgagttaattg 10619013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 33935514 - 33935653
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||| ||||| ||||||||| ||||||||||||||||||||||  ||| ||| |||||||||| ||||||||| | ||||||   ||||||| ||     
T  33935514 caagttcatctcatttgtttaacgaacttaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattatcgaatcgagtcc 33935613  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    | ||||||| ||||  |||| || |||| |||||||||||    
T  33935614 caaactattgtcgagttggttcgattcattgccagcccta 33935653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 46573751 - 46573612
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| |||||| | |||||||  ||||||||||| || ||||||| ||||||| |||||||||| ||||||||| | | ||||   |||||||||||    
T  46573751 caagttcgactcatttatttaacgagcttaattttcaacttaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatct 46573652  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    |||| |||||| ||  |||| ||||||| |||||||||||    
T  46573651 cgaattatttttgagttggttcggttcattgccagcccta 46573612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 7447882 - 7447957
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    |||||||||||||| |  |||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  7447882 caagttcaactcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaa 7447957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 17025500 - 17025361
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| |||||| | |||||||  ||||||||||| |||||||||| ||||||| |||| ||||| ||||||||| | | ||||   |||||||| ||    
T  17025500 caagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgagtcaattatcgaatcgaacct 17025401  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
     |||||||||||||  |||| ||||||| || ||||||||    
T  17025400 tgaactattttcgagttggttcggttcattgtcagcccta 17025361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 18740357 - 18740218
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| |||||| | |||||||  ||||||||||| |||||||||| ||||||| |||||||||| ||||| ||  | | ||||    ||||||||||    
T  18740357 caagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagtttaatgagtcaattatcaaatcgaatct 18740258  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  |||| ||||||| |||| ||||||    
T  18740257 cgaactattttcgagttggttcggttcattgccggcccta 18740218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 21760722 - 21760595
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | |||||||   ||| |||||| |||||||||| ||||||| |||| ||||||||||||||| ||| ||||   ||||||| | |    
T  21760722 caagttcaactcatttatttaacgagtttagttttcaactcaagttcgactcatttggttcgtgaacaaagttcaacgaatcaattatcgaatcgagttt 21760623  T
Q  98 cgaactattttcgaactggtacggttca 125  Q
    ||||||||||||||  |||| |||||||    
T  21760622 cgaactattttcgagttggttcggttca 21760595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 49034363 - 49034224
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| |||||| | ||| |||  ||||||||||| |||||||||| ||||||| |||||||||| ||||||||| ||  ||||   ||||||||| |    
T  49034363 caagttcgactcatttatttgacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgaaacaattaccgaatcgaattt 49034264  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  |||  ||||||  |||||||||||    
T  49034263 cgaactattttcgagttggatcggttcgttgccagcccta 49034224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26719821 - 26719892
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagt 72  Q
    |||||||||||||| | ||||||| |||||||||||| |||||||||| ||||||| |||||||||| ||||    
T  26719821 caagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccaagt 26719892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 32356968 - 32357077
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctc 98  Q
    ||||||||||| | |  |||||| |||| ||||||| ||||| |||| |||||||||||||||||  ||||||||| ||||||||   ||||||| ||||    
T  32356968 aagttcaactcgtttacttaacgaactttattttcaactcaaattcggctcatttagttcatgaatcaagttcaacgaattaattatcgaatcgagtctc 32357067  T
Q  99 gaactatttt 108  Q
    ||||||||||    
T  32357068 gaactatttt 32357077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 35543669 - 35543556
Alignment:
Q  27 cttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggtt 123  Q
    ||||||||||| |||||||||| |||||||||||||||||| ||||||||| ||| ||||   |||| || |||| ||||||||||||  |||| || ||    
T  35543669 cttaattttcaactcaagttcgactcatttagttcatgaaccaagttcaacgaatcaattatcgaatggagtctcaaactattttcgagttggttcgatt 35543570  T
Q  124 cactgccagcccta 137  Q
    || || ||||||||    
T  35543569 cattgtcagcccta 35543556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 44422041 - 44421901
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaa-ttttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatc 96  Q
    |||||||| ||||| ||||||||| |||||| ||||||||||||||||  ||| ||| |||||||||| ||||||||| | ||||||   ||||||| ||    
T  44422041 caagttcagctcatttgtttaacgaacttaaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtc 44421942  T
Q  97 tcgaactattttcgaactggtacggttcactgccagcccta 137  Q
     | ||||||| ||||  |||| ||||||| || ||||||||    
T  44421941 ccaaactattgtcgagttggttcggttcattgacagcccta 44421901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 33124705 - 33124840
Alignment:
Q  5 ttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaa 101  Q
    |||| ||||| | ||||||| ||||||||||||||||||||||   |||||| |||||| ||| ||||||||| | ||||||   ||||||| | || ||    
T  33124705 ttcagctcatttatttaacgaacttaattttcagctcaagttcaattcatttggttcataaaccaagttcaacgagttaattgtcgaatcgagtttcaaa 33124804  T
Q  102 ctattttcgaactggtacggttcactgccagcccta 137  Q
    ||||| ||||  |||| ||||||| |||||||||||    
T  33124805 ctattgtcgagttggttcggttcattgccagcccta 33124840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36472445 - 36472521
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    ||||||||||| || | |||||||  ||||||||||| |||||||||| ||||||| |||||||||| |||||||||    
T  36472445 caagttcaacttatttatttaacgagcttaattttcaactcaagttcggctcatttggttcatgaaccaagttcaac 36472521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 17608718 - 17608812
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattgaatcgaat 95  Q
    |||||||||||||  |  || ||| ||||||||||||| ||||||||| ||||||| |||||| ||| |||||| || ||| |||||||||||||    
T  17608718 caagttcaactcaattagttgacgaacttaattttcagatcaagttcggctcatttggttcatcaaccaagttcgacgaatcaattgaatcgaat 17608812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 22075069 - 22075155
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||| ||||| | ||||||| ||||||||||||||||||||||  ||||||| |||| ||||| | ||||||| | |||||||    
T  22075069 caagttcagctcatttatttaacgaacttaattttcagctcaagttcagctcatttggttcgtgaaccacgttcaacgagttaattg 22075155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 222365 - 222226
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||| ||||| ||||||||| | ||||||||||| ||||||||  ||| ||| |||||||||| || |||||| | ||||||   ||||| | ||     
T  222365 caagttcagctcatttgtttaacgaatttaattttcagttcaagttcagctcgtttggttcatgaaccaaattcaacgagttaattgtcgaatcaagtcc 222266  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    | ||||||| ||||  |||| ||||||| |||||||||||    
T  222265 caaactattgtcgagttggttcggttcattgccagcccta 222226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 23227138 - 23226999
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||  ||||| | ||||||| ||||||||||||||||||||||  |||||||  |||||| || |||||||||||  |||||   ||||||| | |    
T  23227138 caagttcggctcatttatttaacgaacttaattttcagctcaagttcagctcatttgattcatgtaccaagttcaacaagataattgtcgaatcgagttt 23227039  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||| ||||  |||| ||| ||| | |||||||||    
T  23227038 cgaactattgtcgagttggttcggatcattaccagcccta 23226999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 23236291 - 23236152
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||  ||||| | ||||||| ||||||||||||||||||||||  |||||||  |||||| || |||||||||||  |||||   ||||||| | |    
T  23236291 caagttcggctcatttatttaacgaacttaattttcagctcaagttcagctcatttgattcatgtaccaagttcaacaagataattgtcgaatcgagttt 23236192  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||| ||||  |||| ||| ||| | |||||||||    
T  23236191 cgaactattgtcgagttggttcggatcattaccagcccta 23236152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 45055734 - 45055819
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| |  |||||| ||||||| || |||||||||||| ||| ||| |||||||||| ||||||||| || |||||    
T  45055734 caagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaatt 45055819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 45176251 - 45176336
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| |  |||||| ||||||||||||||| ||||||  ||| ||| |||||||||| |||||||||  |||||||    
T  45176251 caagttcaactcatttaattaacgaacttaattttcagctaaagttcagctcgtttggttcatgaaccaagttcaacggattaatt 45176336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 48634460 - 48634529
Alignment:
Q  8 aactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    ||||||| | ||||||| |||||||||| |||||||||||  ||||||| |||||||||| |||||||||    
T  48634460 aactcatttatttaacgaacttaatttttagctcaagttcaactcatttggttcatgaaccaagttcaac 48634529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 11595935 - 11595850
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||| ||||||||| |  |||||| ||||||| || |||||||||||| ||| ||| |||||||||| ||||||||| || |||||    
T  11595935 caaggtcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaatt 11595850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 37334284 - 37334427
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || ||||||||| |    
T  37334284 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgaatcgaatgt 37334383  T
Q  98 cgaactattttcgaactggtacggttcactgccagccctatgca 141  Q
    ||||||||  ||||  |||| ||||||| || || |||||||||    
T  37334384 cgaactataatcgagttggttcggttcattgtcaaccctatgca 37334427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 37401680 - 37401565
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggt 122  Q
    |||||||||||| |||||||| | ||||||| |||||||||  ||||||||||||| ||||   |||||||||  |||||| |  ||||| ||||  |||    
T  37401680 acttaattttcaactcaagtttggctcatttggttcatgaatcaagttcaacaaatcaattttcgaatcgaattacgaactctaatcgaattggtttggt 37401581  T
Q  123 tcactgccagccctat 138  Q
    ||| || |||||||||    
T  37401580 tcattgtcagccctat 37401565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 31491821 - 31491931
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||||||| || | ||||||| ||||||| || || | ||||||| ||||||| |||||||    ||||||||| ||||||||   |||||||||||    
T  31491821 caagttcaactaatttatttaacgaacttaatattgagtttaagttcgactcatttggttcatgtgtcaagttcaacgaattaattatcgaatcgaatct 31491920  T
Q  98 cgaactatttt 108  Q
    | |||||||||    
T  31491921 caaactatttt 31491931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 33473082 - 33473046
Alignment:
Q  50 ctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33473082 ctcatttaattcatgaacaaagttcaacaaattaatt 33473046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 36927005 - 36927143
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||||||||| |  |||||| |||||||||| ||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  36927005 caagttcaactcatttaattaacgaacttaatttttagctcaagtccaactcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgt 36927104  T
Q  98 cgaactattttcgaactggtacggttcactgccagccct 136  Q
    ||||||||  ||||  |||| ||||||| ||||||||||    
T  36927105 cgaactataatcgagttggttcggttcattgccagccct 36927143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 48505927 - 48505851
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||||||  |||||||||| |||||||||    
T  48505927 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcattaggttcatgaaccaagttcaac 48505851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 37239840 - 37239910
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagt 72  Q
    ||||||||||||| || |||||  |||| ||||| ||||||| ||| |||||||| |||||||||| ||||    
T  37239840 aagttcaactcatttgattaacaaacttgattttaagctcaaattcatctcatttggttcatgaaccaagt 37239910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 40480190 - 40480104
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctc-atttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| |  |||||| ||||||| || |||||||||||| |||  ||| |||||||||| ||||||||| || |||||    
T  40480190 caagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcgttttggttcatgaaccaagttcaacgaactaatt 40480104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 5776269 - 5776130
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  5776269 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgt 5776170  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| ||||| |||||    
T  5776169 cgaactataatcgagttggttcggttcattgccaacccta 5776130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 5795075 - 5794936
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  5795075 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgt 5794976  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  |||   |||| ||||||| |||||||||||    
T  5794975 cgaactataatcgggttggttcggttcattgccagcccta 5794936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 33171673 - 33171534
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg---aatcgaatct 97  Q
    |||||||  ||||| | ||||| | |||||||||| |||||||||||  ||||||| |||||| ||  |||||||||||  ||||||    ||||| | |    
T  33171673 caagttcggctcatttatttaatgaacttaatttttagctcaagttcagctcatttggttcataaatcaagttcaacaagataattgtcttatcgagttt 33171574  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||| ||||  |||| ||| ||| |||||||||||    
T  33171573 cgaactattatcgagttggttcggatcattgccagcccta 33171534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 43052878 - 43053017
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| ||||||||||| |||||||| |  ||||||  |||||||||| |||||||||  ||||   || || |||||| |    
T  43052878 caagttcagctcatctaattaacgaacttaattttcggctcaagtccagctcattaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgt 43052977  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| ||||| |||||    
T  43052978 cgaactataatcgagttggttcggttcattgccaacccta 43053017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 37106857 - 37106917
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||| |||||||||||| ||||||| || ||| ||| |||||| || ||||||||    
T  37106857 acttaatttttagctcaagttcggctcatttggtacattaactaagttcgacgaattaatt 37106917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 12710703 - 12710842
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| |||||| | |||||||  ||||||||||| |||||||||| ||||||| |||||||||| ||||||||| | | ||||   |||||||||||    
T  12710703 caagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatct 12710802  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  |||| ||||||| |||||||||||    
T  12710803 cgaactattttcgagttggttcggttcattgccagcccta 12710842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 9505260 - 9505121
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||| ||||| | ||||||| ||||||||||||||||||||||  ||||||| |||||||||| ||||||||| | ||||||   ||||||| |      
T  9505260 caagttcagctcatttatttaacgaacttaattttcagctcaagttcaactcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagttc 9505161  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||| ||||  |||| ||||||| |||||||||||    
T  9505160 cgaactattgtcgagttggttcggttcattgccagcccta 9505121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 39942939 - 39942832
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||| ||||| | ||||||| ||||||||||||||||||||||  |||||| ||||||||||| |||||||||| |||||||   ||||||||| |    
T  39942939 caagttcagctcatctatttaacgaacttaattttcagctcaagttcagctcattaagttcatgaaccaagttcaacagattaattgccgaatcgaattt 39942840  T
Q  98 cgaactat 105  Q
    ||||||||    
T  39942839 cgaactat 39942832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 52199430 - 52199516
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||| ||||| ||||||||| ||||||||||||||||||||||  ||| ||| |||||||||| ||||||||| |||||||||    
T  52199430 caagttcagctcatttgtttaacgaacttaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgaattaattg 52199516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 26049679 - 26049541
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| ||| || | |||||||  ||||||||||| |||||||||| |||||||  ||||||||| ||||||||||  | ||||   |||||||||||    
T  26049679 caagttcgactaatttatttaacgagcttaattttcaactcaagttcgactcatttgattcatgaaccaagttcaacaggtcaattatcgaatcgaatct 26049580  T
Q  98 cgaactattttcgaactggtacggttcactgccagccct 136  Q
    | ||||||||||||  |||| ||||||| ||||||||||    
T  26049579 caaactattttcgagttggttcggttcattgccagccct 26049541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 30662270 - 30662131
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| |||||| | |||||||  ||||||||||| |||||||||| |||||||  ||||||||| ||||||||| | | ||||   |||||||||||    
T  30662270 caagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttgattcatgaaccaagttcaacgagtcaattatcgaatcgaatct 30662171  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    | ||||||||||||  |||| ||| ||| || ||||||||    
T  30662170 caaactattttcgagttggttcggctcattgtcagcccta 30662131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 20550341 - 20550228
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||| |||||||| | ||||||| | |||||||||| |||| ||||| ||||||| |||| ||||| ||||||||||||| ||||   ||||||| | |    
T  20550341 caagtacaactcatttatttaacgaatttaattttcaactcatgttcgactcatttggttcgtgaaccaagttcaacaaatcaattatcgaatcgagtat 20550242  T
Q  98 cgaactattttcga 111  Q
    ||||||||||||||    
T  20550241 cgaactattttcga 20550228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 39135356 - 39135430
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    ||||||| ||||| |  |||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  39135356 aagttcagctcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaa 39135430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 46293351 - 46293277
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    ||||||||||||| |  |||||| ||||||||||||||||||||||| ||||||| |||||||||| || |||||    
T  46293351 aagttcaactcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaaattcaa 46293277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5418679 - 5418764
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| |  |||||| ||||||| || |||||||||||| ||| ||| |||||||||| |||||||||||| |||||    
T  5418679 caagttcaactcatttagttaacgaacttaatctttagctcaagttcgactcgtttggttcatgaactaagttcaacaaactaatt 5418764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 33438845 - 33438784
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||| |||||    
T  33438845 acttaattttcagctcaagttcgactcatttggttcatgaaccaagttcaacgaatcaattg 33438784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 40943562 - 40943701
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | |||||||  ||||||||||| |||||||||| ||||||| |||||||||| |||| |||  ||  ||||    |||||| | |    
T  40943562 caagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcaaatcgagtat 40943661  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  |||| ||||| | |||||||||||    
T  40943662 cgaactattttcgagttggttcggtttattgccagcccta 40943701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 54393557 - 54393443
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggt 122  Q
    ||||||||||||||||||||||| ||||||| ||| |||||| ||||||||| ||| ||||   |||||||||  |||||| |  ||||  |||| ||||    
T  54393557 acttaattttcagctcaagttcggctcatttggtttatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggt 54393458  T
Q  123 tcactgccagcccta 137  Q
    ||| |||||||||||    
T  54393457 tcattgccagcccta 54393443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 26136337 - 26136442
Alignment:
Q  4 gttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcga 100  Q
    ||||||||||| ||||||||  || ||||||| | |||||||||| |||| ||||||||| ||| |||||||||||| |||||   ||||||| |||| |    
T  26136337 gttcaactcatttgtttaacaaacataattttgaactcaagttcggctcacttagttcataaaccaagttcaacaaactaattaacgaatcgagtctcaa 26136436  T
Q  101 actatt 106  Q
    ||||||    
T  26136437 actatt 26136442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 54432330 - 54432259
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagt 72  Q
    |||||||||||||| | |||||||  ||||||||| | |||||||||| |||||||||||||||||| ||||    
T  54432330 caagttcaactcatttatttaacgagcttaatttttaactcaagttcgactcatttagttcatgaaccaagt 54432259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 25253720 - 25253781
Alignment:
Q  18 tttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaa 79  Q
    ||||||| |||||||||| |||||||||||  ||||||| |||||||||| |||||||||||    
T  25253720 tttaacgaacttaatttttagctcaagttcagctcatttggttcatgaaccaagttcaacaa 25253781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 39469652 - 39469595
Alignment:
Q  19 ttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    |||||| ||||||||||||||||||||||| |||||||  ||||||||| ||||||||    
T  39469652 ttaacgaacttaattttcagctcaagttcggctcatttgattcatgaaccaagttcaa 39469595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 52199390 - 52199445
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcattt 56  Q
    |||||||| ||||| ||||||||| ||||||||||||||||||||||  |||||||    
T  52199390 caagttcagctcatttgtttaacgaacttaattttcagctcaagttcagctcattt 52199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 52934813 - 52934888
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    |||||||  ||||| | ||||||| ||||||||||| ||||||||||  ||||||| |||||||||| ||||||||    
T  52934813 caagttcggctcatttatttaacgaacttaattttctgctcaagttcagctcatttggttcatgaaccaagttcaa 52934888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 19560913 - 19560774
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||  ||||| | |||||||||||||| | | | |||||||||  ||  ||| |||||||||| ||||||||| ||||||||   || ||||||      
T  19560913 caagttcggctcatttatttaacggacttaactcttaactcaagttcagcttgtttcgttcatgaaccaagttcaacgaattaattgtcgagtcgaattc 19560814  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    |||||||| |||||  |||| ||||||| |||||||||||    
T  19560813 cgaactatattcgagttggttcggttcattgccagcccta 19560774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 18074595 - 18074662
Alignment:
Q  19 ttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||| ||||||||||||| |||| |||  |||||||||||||||||  || |||||| ||||||||    
T  18074595 ttaacgaacttaattttcagttcaaattcaactcatttagttcatgaaacaaattcaacgaattaatt 18074662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 15822462 - 15822374
Alignment:
Q  27 cttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaa 112  Q
    ||||||||||| |||||||||  |||| || | |||||||| ||||||||| ||  ||||   ||||||||| ||||||||||||||||    
T  15822462 cttaattttcaactcaagttctactcaattggatcatgaaccaagttcaacgaaacaattaccgaatcgaatttcgaactattttcgaa 15822374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 23206422 - 23206364
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaa 84  Q
    |||||||||||||||||||| |  ||| ||  ||||||||||||||||||||| |||||    
T  23206422 acttaattttcagctcaagtccagctcgttaggttcatgaacaaagttcaacagattaa 23206364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28242584 - 28242670
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    ||||||||  |||| | ||||||| | |||||||||||||||| |||  ||||||| |||||||||| || |||||| | |||||||    
T  28242584 caagttcagatcatttatttaacgaatttaattttcagctcaaattcagctcatttggttcatgaaccaaattcaacgagttaattg 28242670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 33692039 - 33691969
Alignment:
Q  17 gtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||| ||||| | || ||||||||||| | |||||||||| |||||| || |||||||||| |||||    
T  33692039 gtttaacgaacttactcttaagctcaagttcatttcatttagtttatgaaccaaattcaacaaatcaattg 33691969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 1674659 - 1674708
Alignment:
Q  30 aattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaa 79  Q
    ||||||||||| ||||||  ||||||| |||||||||| |||||||||||    
T  1674659 aattttcagcttaagttcaactcatttggttcatgaaccaagttcaacaa 1674708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 32689170 - 32689309
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  32689170 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgt 32689269  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| || ||||||||    
T  32689270 cgaactataatcgagttggttcggttcattgtcagcccta 32689309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41609889 - 41609965
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||    
T  41609889 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 41609965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 51995079 - 51995212
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||| | | ||||||  |||||||||| |||||||||||| ||||||| |||||||||| ||||||||| ||||||||   ||||||| |||    
T  51995079 caagttcaactcgtttatttaacaaacttaattttgagctcaagttcggctcatttggttcatgaaccaagttcaacgaattaattatcgaatcgagtct 51995178  T
Q  98 cgaactattttcgaactggtacggttcactgcca 131  Q
    ||||||||||||||  |||| ||||||| |||||    
T  51995179 cgaactattttcgagttggttcggttcattgcca 51995212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 22184504 - 22184643
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||| ||||| ||||||||| ||||||||||||||||||||||  ||| ||| |||||||||| ||||||||| | ||||||   ||||||| ||     
T  22184504 caagttcagctcatttgtttaacgaacttaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcc 22184603  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    | ||||||| ||||  |||| ||||||| |||||||||||    
T  22184604 caaactattgtcgagttggttcggttcattgccagcccta 22184643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 12673167 - 12673034
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| |||||| | ||||| |  ||||||||||| |||||||||| ||||||| |||||||||| ||||||||| | | ||||   |||||||||||    
T  12673167 caagttcgactcatttatttaatgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatct 12673068  T
Q  98 cgaactattttcgaactggtacggttcactgcca 131  Q
    ||||||||||||||  |||| ||||||| |||||    
T  12673067 cgaactattttcgagttggttcggttcattgcca 12673034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 51408088 - 51407949
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| ||||| ||| |||||||||| | | || ||||| ||||||| |||||||||| ||||| ||| ||||||||   ||||||| |||    
T  51408088 caagttcaactcatttgtttgacgaacttaattttaaacccaggttcgactcatttggttcatgaaccaagttgaacgaattaattaccgaatcgagtct 51407989  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  |||| | ||||| || ||||||||    
T  51407988 cgaactattttcgagttggttcagttcattgtcagcccta 51407949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 55892124 - 55891985
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| ||||| ||| |||||||||| | | || ||||| ||| ||| |||||||||| ||||||||| ||||||||   ||||||| |||    
T  55892124 caagttcaactcatttgtttgacgaacttaattttaaacccaggttcgactcgtttggttcatgaaccaagttcaacgaattaattaccgaatcgagtct 55892025  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||| ||  |||| | ||||| || ||||||||    
T  55892024 cgaactatttttgagttggttcagttcattgtcagcccta 55891985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 80524 - 80638
Alignment:
Q  27 cttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggtt 123  Q
    ||||||||||| |||||||||| ||||||| |||||||||| ||||||||| ||  ||||   ||||| ||| |||||||||||||||  |||  |||||    
T  80524 cttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgaaacaattaccgaatcaaatttcgaactattttcgagttggatcggtt 80623  T
Q  124 cactgccagccctat 138  Q
    || ||||||||||||    
T  80624 cattgccagccctat 80638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 25134575 - 25134646
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagt 72  Q
    |||||||||||||| | ||||||| |||||||||||| |||||||||| ||||||| |||||||||| ||||    
T  25134575 caagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccaagt 25134646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 28265809 - 28265673
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| ||||| ||| |||||||||| | ||||  |||   || ||| |||||||||| ||||||||| ||||||||   ||||||| |||    
T  28265809 caagttcaactcatttgtttgacgaacttaattttaaactcagattc---tcgtttggttcatgaaccaagttcaacgaattaattaccgaatcgagtct 28265713  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  |||| | ||||| |||||||||||    
T  28265712 cgaactattttcgagttggttcagttcattgccagcccta 28265673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 40797831 - 40797906
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    |||||||||||||| | |||||||  ||||||||||| |||||||||| ||||||| |||||||||| ||||||||    
T  40797831 caagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaa 40797906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 52813602 - 52813688
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||| ||||| ||||||||| ||||||||||||||| ||||||  ||| ||| |||||||||| ||||||||| | |||||||    
T  52813602 caagttcagctcatttgtttaacgaacttaattttcagcttaagttcagctcgtttggttcatgaaccaagttcaacgagttaattg 52813688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 1803499 - 1803633
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattgaatcgaatctcga 100  Q
    |||||||||||||| | |||||||  ||||||||| | |||||||||| ||||||  |||||||||  ||||| ||| ||| ||||  |||||||||||     
T  1803499 caagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaatcaagtttaacgaatcaatt--atcgaatctcgc 1803596  T
Q  101 actattttcgaactggtacggttcactgccagcccta 137  Q
    ||| |||||||  |||| ||||||| || ||||||||    
T  1803597 actcttttcgagttggttcggttcattgtcagcccta 1803633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 13455702 - 13455813
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||| | | ||||||| |||||||||| |||||||||| | ||||||| |||||| ||  ||||||||| ||||||||   |||||||||||    
T  13455702 caagttcaactcgtttatttaacgaacttaattttgagctcaagttggactcatttggttcataaatcaagttcaacgaattaattatcgaatcgaatct 13455801  T
Q  98 cgaactattttc 109  Q
    | || |||||||    
T  13455802 caaattattttc 13455813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 19455297 - 19455183
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg---aatcgaatct 97  Q
    |||||||||||||| |   ||||  |||||||||||| |||||||||  |||||||  ||||||||| ||||||||| |||||||||   |||||| | |    
T  19455297 caagttcaactcatttagataacaaacttaattttcaactcaagttcagctcatttgattcatgaaccaagttcaacgaattaattgtcaaatcgagttt 19455198  T
Q  98 cgaactattttcgaa 112  Q
    |||||||||||||||    
T  19455197 cgaactattttcgaa 19455183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 48339213 - 48339158
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaat 81  Q
    ||||||||||||||||||||||| |||||||  ||||||||| |||||||||||||    
T  48339213 acttaattttcagctcaagttcgactcatttgattcatgaaccaagttcaacaaat 48339158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 24008042 - 24007898
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaat---taattgaatcgaatct 97  Q
    |||||||||||||| | ||||||| |||||||||| | ||||||||   ||| ||  |||||||||| ||||||||| |||   | ||  ||||||||||    
T  24008042 caagttcaactcatttatttaacgaacttaattttaaactcaagtttaactcgttaggttcatgaaccaagttcaacgaatcaatcatcaaatcgaatct 24007943  T
Q  98 cgaactattttcgaactggtacggttcactgccagccctatgcac 142  Q
    ||||||||||||||  |||| |  |||| || |||||||||||||    
T  24007942 cgaactattttcgagttggttcaattcattgtcagccctatgcac 24007898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 56224146 - 56224232
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    ||||||||||| || |  |||||| | ||||||||||||||||||||| ||||||| ||| || ||| ||||||||| |||||||||    
T  56224146 caagttcaacttatttaattaacgaatttaattttcagctcaagttcggctcatttggtttattaaccaagttcaacgaattaattg 56224232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 7505530 - 7505615
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| |  |||||| | |||||||| |||||||||||| ||||||| |||||||||  ||||||||| || |||||    
T  7505530 caagttcaactcatttagttaacgaatttaatttttagctcaagttcggctcatttggttcatgaatcaagttcaacgaactaatt 7505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 11055365 - 11055226
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||  ||||| | ||||||| ||||||||||| ||||||||||  ||||||| |||||||||| ||||||||  | ||||||   ||||||| |      
T  11055365 caagttcggctcatttatttaacgaacttaattttccgctcaagttcagctcatttggttcatgaaccaagttcaatgagttaattatcgaatcgagttc 11055266  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||| ||||  |||| ||||||| || ||||||||    
T  11055265 cgaactattgtcgagttggttcggttcattgtcagcccta 11055226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 26632937 - 26633076
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||  ||||| | ||||||| ||||||||||||||||||||||  ||||||| ||| |||| | ||||||||| | ||||||   ||||||| |      
T  26632937 caagttcggctcatttatttaacgaacttaattttcagctcaagttcagctcatttggttaatgagccaagttcaacgagttaattgtcgaatcgagtta 26633036  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||| ||||  |||| ||||||| |||| ||||||    
T  26633037 cgaactattatcgagttggttcggttcattgccggcccta 26633076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 36156408 - 36156347
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    ||||||||||||||||||||||| ||||||| ||||| |||| ||||||||| ||| |||||    
T  36156408 acttaattttcagctcaagttcggctcatttggttcaagaaccaagttcaacgaatcaattg 36156347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 44378251 - 44378379
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattgaatcgaatctcga 100  Q
    |||||||||||||| | |||||||  ||||||||||| | ||| |||  ||||||| |||||||||| |||||||||         ||||||| |||| |    
T  44378251 caagttcaactcatttatttaacgagcttaattttcaacccaaattcaactcatttggttcatgaaccaagttcaac---------gaatcgagtctcaa 44378341  T
Q  101 actattttcgaactggtacggttcactgccagccctat 138  Q
    |||||||||||| |||| ||||||| || |||||||||    
T  44378342 actattttcgaattggttcggttcattggcagccctat 44378379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 50606009 - 50606148
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  50606009 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgt 50606108  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||| |||| ||||||| |||||||||||    
T  50606109 cgaactataatcgaattggttcggttcattgccagcccta 50606148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 50147032 - 50146918
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggt 122  Q
    |||||||||||||||||||| ||  |||||| |||||||||| ||||||||| ||| ||||   |||||||||  |||||| |  ||||| |||| ||||    
T  50147032 acttaattttcagctcaagtccggttcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgaattggttcggt 50146933  T
Q  123 tcactgccagcccta 137  Q
    ||| ||| |||||||    
T  50146932 tcattgctagcccta 50146918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 6866217 - 6866170
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagtt 73  Q
    ||||||||||||||||||||||| ||||||| |||||||||| |||||    
T  6866217 acttaattttcagctcaagttcggctcatttggttcatgaaccaagtt 6866170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 9469798 - 9469853
Alignment:
Q  21 aacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    |||| ||||||||||||||||||||| | ||||||| |||||||||| ||||||||    
T  9469798 aacgaacttaattttcagctcaagtttggctcatttggttcatgaaccaagttcaa 9469853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 36543782 - 36543857
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    |||||||| ||||| |  |||||| ||||||||||||||||||||| | || |||| |||||||||| ||||||||    
T  36543782 caagttcagctcatttaattaacgaacttaattttcagctcaagtttggcttatttggttcatgaaccaagttcaa 36543857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 48151265 - 48151152
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| ||| || | ||||||| ||||||||||||||||||||||  ||||||| |||  ||||| |||||||||||  |||||   ||||||| | |    
T  48151265 caagttcgacttatttatttaacgaacttaattttcagctcaagttcagctcatttggtttgtgaaccaagttcaacaagataattgtcgaatcgagttt 48151166  T
Q  98 cgaactattttcga 111  Q
    ||||||||| ||||    
T  48151165 cgaactattgtcga 48151152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 12789691 - 12789552
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| ||||||||||||||||||||||  ||| ||  |||||| ||| |||||||||  ||||   || || |||||| |    
T  12789691 caagttcagctcatttaattaacgaacttaattttcagctcaagttcagctcgttaggttcataaaccaagttcaacggattagatatcgagtcgaatgt 12789592  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| |||||||||||    
T  12789591 cgaactataatcgagttggttcggttcattgccagcccta 12789552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 52706218 - 52706303
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| |  |||||| ||||||| || |||||||||||| ||| ||| |||||||||| ||||| ||| || |||||    
T  52706218 caagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagtttaacgaactaatt 52706303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19852979 - 19853055
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| | |||| ||  |||||||||| |||||||||    
T  19852979 caagttcagctcatttaattaacgaacttaattttcagctcaagtccatctcgttaggttcatgaaccaagttcaac 19853055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22721329 - 22721403
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    |||||||||||||| | ||||||| |||||||||| |||| ||||| | ||| ||| |||||||||| ||||||||    
T  22721329 caagttcaactcatttatttaacgaacttaatttt-agcttaagtttgcctcgtttggttcatgaaccaagttcaa 22721403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 34718157 - 34718216
Alignment:
Q  18 tttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    ||||||| | ||||||||||||| ||||||| |||||||||||||| ||| || ||||||    
T  34718157 tttaacgaaattaattttcagctgaagttcgactcatttagttcataaaccaaattcaac 34718216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 49405748 - 49405635
Alignment:
Q  27 cttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggtt 123  Q
    ||||||||||   ||||||||| ||||||| |||||| ||| ||||||||| ||| ||||   ||||||| | ||||||||||||||   |||| |||||    
T  49405748 cttaattttcgattcaagttcgactcatttggttcataaaccaagttcaacgaatcaattaccgaatcgagtttcgaactattttcgggttggttcggtt 49405649  T
Q  124 cactgccagcccta 137  Q
    || || ||||||||    
T  49405648 cattgtcagcccta 49405635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 13761825 - 13761886
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||||||||||||| |||  ||||||| |||||||||| |||| |||| | |||||||    
T  13761825 acttaattttcagctcaaattcagctcatttggttcatgaaccaagtccaacgagttaattg 13761886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 48977577 - 48977716
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| | ||||||||||||||| || |  ||||||  |||||||||| ||||||||| |||||   || || |||||| |    
T  48977577 caagttcagctcatttaattaacgaatttaattttcagctcatgtccagctcattaggttcatgaacgaagttcaacgaattaaatatcgagtcgaatgt 48977676  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    |||| |||  ||||  |||| ||||||| |||||||||||    
T  48977677 cgaattataatcgagttggttcggttcattgccagcccta 48977716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 53369873 - 53370012
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || | |||| |    
T  53369873 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagttgaatgt 53369972  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| |||||||||||    
T  53369973 cgaactataatcgagttggttcggttcattgccagcccta 53370012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 9874306 - 9874220
Alignment:
Q  42 aagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggttca 125  Q
    ||||||| ||||||| ||||||| || || |||||| ||||||||   ||||||||||| |||||||||| ||  |||| |||||||    
T  9874306 aagttcggctcatttggttcatgtaccaatttcaacgaattaattactgaatcgaatcttgaactatttttgagttggttcggttca 9874220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 15697204 - 15697136
Alignment:
Q  19 ttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||| |||||||||| |||||||||||  || |||| |||||||||  ||||||||| ||| |||||    
T  15697204 ttaacgaacttaatttttagctcaagttcagcttatttggttcatgaatcaagttcaacgaatcaattg 15697136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21441582 - 21441658
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||    
T  21441582 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 21441658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 27891418 - 27891473
Alignment:
Q  31 attttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||||||||||||  ||||||| |||||||||| ||||||||| | |||||||    
T  27891418 attttcagctcaagttcagctcattt-gttcatgaaccaagttcaacgagttaattg 27891473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 52733838 - 52733775
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaa 66  Q
    |||||||||| || | ||||||| |||||||||||||||||| |||  ||||||| |||||||||    
T  52733838 aagttcaacttatttatttaacgaacttaattttcagctcaa-ttcaactcatttggttcatgaa 52733775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 28006351 - 28006490
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| |||||| | |||||||  ||||||||||| |||||||||| ||||||| |||||||||| ||||||||| | | ||||   |||||||||||    
T  28006351 caagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatct 28006450  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  |||| ||||||| |||| ||||||    
T  28006451 cgaactattttcgagttggttcggttcattgccggcccta 28006490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 50447342 - 50447482
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | ||||||| |||||||||| || ||||||||| ||||||| |||||| ||| ||||| ||| ||||||||   ||||||| |||    
T  50447342 caagttcaactcatttatttaacgaacttaattttaagttcaagttcggctcatttggttcataaaccaagtttaacgaattaattatcgaatcgagtct 50447441  T
Q  98 cgaactattttcgaactggtacggttcactgccagccctat 138  Q
    ||||||||||||||  ||||  |||||| || |||||||||    
T  50447442 cgaactattttcgagttggtttggttcattgtcagccctat 50447482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 24575910 - 24576051
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| |||||| | ||||||   ||||||||||| ||||||||||| |||||| |||||||||| ||||||||| | | ||||   ||||| |||||    
T  24575910 caagttcgactcatttatttaacaagcttaattttcaactcaagttcgtttcatttggttcatgaaccaagttcaacgagtcaattatcgaatcaaatct 24576009  T
Q  98 cgaactattttcgaactggtacggttcactgccagccctatg 139  Q
    ||||||||||||||  |||| ||||||| || ||||||||||    
T  24576010 cgaactattttcgagttggttcggttcattgtcagccctatg 24576051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 39802906 - 39802767
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||  ||||| | ||||||| |||||||||||| |||||||||| ||||||| |||||||||| | ||||||| |||||| |   ||| ||| |||    
T  39802906 caagttcggctcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccatgttcaacgaattaactgccgaaccgagtct 39802807  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  |||| || |||| |||||||||||    
T  39802806 cgaactattttcgagttggttcgattcattgccagcccta 39802767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5204608 - 5204495
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||| |||||| | ||||||| |||||||||||| |||||||||| ||||||| ||||| |||| ||||||||| | | ||||   |||||||||||    
T  5204608 caagttcgactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcacgaaccaagttcaacgagtcaattatcgaatcgaatct 5204509  T
Q  98 cgaactattttcga 111  Q
    | ||||||||||||    
T  5204508 caaactattttcga 5204495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27076654 - 27076569
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||| | | ||||||| |||||| ||| |||||||||||| ||||||||||||||| || ||||||||| ||||||||    
T  27076654 caagttcaactcgtttatttaacgaacttaactttgagctcaagttcggctcatttagttcatggaccaagttcaacgaattaatt 27076569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 47983257 - 47983396
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctc 98  Q
    ||||||||||||| | |||||||   |||  ||| | |||||||||| ||||||| |||| ||||| ||||||||||||| ||||   ||||||||||||    
T  47983257 aagttcaactcatttatttaacgagtttagattttaactcaagttcgactcatttggttcgtgaaccaagttcaacaaatcaattatcgaatcgaatctc 47983356  T
Q  99 gaactattttcgaactggtacggttcactgccagccctat 138  Q
    |||||||||||||  |||| ||||||| || || ||||||    
T  47983357 gaactattttcgagttggttcggttcattgtcaaccctat 47983396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 35810744 - 35810858
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggt 122  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||| ||||   |||||||||  |||||| |  ||||  |||| ||||    
T  35810744 acttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggt 35810843  T
Q  123 tcactgccagcccta 137  Q
    ||| |||||||||||    
T  35810844 tcattgccagcccta 35810858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 12224684 - 12224575
Alignment:
Q  31 attttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggttcact 127  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||||| | ||||||   |||||||||  ||||||||| ||||  |||| ||||||| |    
T  12224684 attttcagctcaagttcggctcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgaattccgaactattgtcgagttggttcggttcatt 12224585  T
Q  128 gccagcccta 137  Q
    | ||||||||    
T  12224584 gtcagcccta 12224575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 40159769 - 40159636
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | ||||||| |||||||||||| |||||||||| |||||||  ||||||||| |||| |||  ||  ||||   ||||||||| |    
T  40159769 caagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttgattcatgaaccaagtccaatgaaccaattatcgaatcgaatat 40159670  T
Q  98 cgaactattttcgaactggtacggttcactgcca 131  Q
    | ||||||||||||  |||| ||||||| |||||    
T  40159669 caaactattttcgagttggttcggttcattgcca 40159636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 21680776 - 21680656
Alignment:
Q  20 taacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactgg 116  Q
    ||||| |||||||||| |||||||||||| |||||||  ||||| ||| ||||||||| |  |||||   ||||||| | ||||||||||||||| ||||    
T  21680776 taacgaacttaatttttagctcaagttcggctcatttcattcataaaccaagttcaacgagataattatcgaatcgagtttcgaactattttcgagctgg 21680677  T
Q  117 tacggttcactgccagcccta 137  Q
    | ||||||| ||||| |||||    
T  21680676 ttcggttcattgccaacccta 21680656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31869595 - 31869681
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||  ||||| | ||||||| ||||||||||||||| ||||||| ||||||| |||||||||| ||||||||| | |||||||    
T  31869595 caagttcggctcatttatttaacgaacttaattttcagcttaagttcggctcatttggttcatgaaccaagttcaacgatttaattg 31869681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 14578699 - 14578638
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||| |||||    
T  14578699 acttaattttcagctccagttcggctcatttggttcatgaaccaagttcaacaaatcaattg 14578638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 29677658 - 29677519
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||| ||||| | ||||| |  ||||||||||| |||||||||| ||||||| |||| ||||| ||||||||| ||  ||||    |||||| | |    
T  29677658 caagttcagctcatttatttaaagagcttaattttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgaaccaattatcaaatcgagtat 29677559  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  |||| ||||||| |||||||||||    
T  29677558 cgaactattttcgagttggttcggttcattgccagcccta 29677519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 38061317 - 38061178
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg---aatcgaatct 97  Q
    |||||||||||||| | |||||||  ||||||||| | || ||||||| ||||||  |||||| ||  ||||||||| ||| ||||    ||||||||||    
T  38061317 caagttcaactcatttatttaacgagcttaattttaaacttaagttcgactcattaggttcataaatcaagttcaacgaatcaattatcaaatcgaatct 38061218  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    || |||||||||||  |||| ||||||| |||||||||||    
T  38061217 cgcactattttcgagttggttcggttcattgccagcccta 38061178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23915736 - 23915660
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    |||||||||||||| | ||||| | ||||||||||||||| ||||||  ||||||| |||||||||| |||||||||    
T  23915736 caagttcaactcatttatttaatgaacttaattttcagctaaagttcagctcatttggttcatgaaccaagttcaac 23915660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 46265058 - 46265010
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttc 74  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  46265058 acttaattttcagctcaagttcggctcatttagttcatgaaccaagttc 46265010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 25124997 - 25124884
Alignment:
Q  28 ttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggttc 124  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||| ||||    ||||||||  |||||| |  ||||  |||| ||||||    
T  25124997 ttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaattatcaaatcgaattacgaactttaatcgagttggttcggttc 25124898  T
Q  125 actgccagccctat 138  Q
    | ||||||||||||    
T  25124897 attgccagccctat 25124884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 44596524 - 44596657
Alignment:
Q  7 caactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaact 103  Q
    |||||||| | ||||||| ||||||||||||| ||||||||  ||||||| |||||||||| || |||||| | ||||||   ||||||| |  | ||||    
T  44596524 caactcatttatttaacgaacttaattttcagttcaagttcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcgagttccaaact 44596623  T
Q  104 attttcgaactggtacggttcactgccagcccta 137  Q
    ||| ||||  |||| ||||||| |||||||||||    
T  44596624 attgtcgagttggttcggttcattgccagcccta 44596657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 6413272 - 6413379
Alignment:
Q  33 tttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg---aatcgaatctcgaactattttcgaactggtacggttcactgc 129  Q
    ||||| ||||||||||  |||||| |||||||||| | ||||||| ||| ||||    ||||||||||||||||||||||||  |||| || |||| |||    
T  6413272 tttcaactcaagttcgattcatttggttcatgaaccaggttcaacgaatcaattatcaaatcgaatctcgaactattttcgagttggttcgattcattgc 6413371  T
Q  130 cagcccta 137  Q
    ||||||||    
T  6413372 cagcccta 6413379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 15306494 - 15306633
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||  ||||| | ||||| | ||||||||||| ||||||||||  ||||||| |||||||||| ||||||||  ||||||||   ||||||| |      
T  15306494 caagttcggctcatttatttaatgaacttaattttccgctcaagttcagctcatttggttcatgaaccaagttcaatgaattaattatcgaatcgagttc 15306593  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||| || |  |||| ||||||| |||||||||||    
T  15306594 cgaactattgtcaagttggttcggttcattgccagcccta 15306633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43087605 - 43087520
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| |  |||||| ||||||| || || ||||||||| ||| ||| |||||||||| |||||||||||| |||||    
T  43087605 caagttcaactcatttaattaacgaacttaatctttagttcaagttcggctcgtttggttcatgaaccaagttcaacaaactaatt 43087520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 7016189 - 7016075
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggt 122  Q
    ||||| |||| |||||||||||  ||||||| |||||||||| ||||||||||||| ||||   ||||||| ||||||| | | |||||  |||| ||||    
T  7016189 acttagttttgagctcaagttcagctcatttggttcatgaaccaagttcaacaaatcaattgtcgaatcgagtctcgaattttgttcgagttggttcggt 7016090  T
Q  123 tcactgccagcccta 137  Q
    ||| || ||||||||    
T  7016089 tcattgtcagcccta 7016075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 42916228 - 42916180
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttc 74  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  42916228 acttaattttcagctcaagttcggctcatttggttcatgaaccaagttc 42916180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 45581122 - 45581008
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggt 122  Q
    ||||||||||| ||||||||||  ||||||| |||||||||| ||||||||| |  |||||   ||||||| | ||||||||||||| |  |||| ||||    
T  45581122 acttaattttccgctcaagttcaactcatttggttcatgaaccaagttcaacgagataattatcgaatcgagtttcgaactattttcaagttggttcggt 45581023  T
Q  123 tcactgccagcccta 137  Q
    ||| || ||||||||    
T  45581022 tcattgtcagcccta 45581008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 45653551 - 45653457
Alignment:
Q  20 taacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcga 111  Q
    ||||| |||||| ||| |||||||||||| ||||||| |||||||||| ||||||||| || |||||   ||||||| | | |||||||||||||    
T  45653551 taacgaacttaacttttagctcaagttcggctcatttggttcatgaaccaagttcaacgaaataattgtcgaatcgagttttgaactattttcga 45653457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 15257306 - 15257239
Alignment:
Q  5 ttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagt 72  Q
    |||||||||| | |||||||  ||||||||||| |||||||||| ||||||| |||||||||| ||||    
T  15257306 ttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagt 15257239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 7995972 - 7996112
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||| | ||||| | |||||||  ||||||||| | || ||||||| ||||||  ||| |||||| ||||||||| ||| ||||   |||||||||||    
T  7995972 caagttgagctcatttatttaacgagcttaattttaaacttaagttcgactcattaggtttatgaaccaagttcaacgaatcaattatcgaatcgaatct 7996071  T
Q  98 cgaactattttcgaactggtacggttcactgccagccctat 138  Q
    |||||||||||| |  |||| ||||||| || || ||||||    
T  7996072 cgaactattttcaagttggttcggttcattgtcaaccctat 7996112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 19508529 - 19508614
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||| ||||||||| |  |||||| ||||||| || |||||||||||| ||| ||| |||||||||| ||||||||| || |||||    
T  19508529 caaggtcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaatt 19508614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24469956 - 24469817
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  24469956 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgt 24469857  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| |||||||||||    
T  24469856 cgaactataatcgagttggttcggttcattgccagcccta 24469817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 32179859 - 32179998
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||||||  ||| |||||| |||||||||  ||||   || || |||||| |    
T  32179859 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcattaggtttatgaaccaagttcaacggattaaatatcgagtcgaatgt 32179958  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| |||||||||||    
T  32179959 cgaactataatcgagttggttcggttcattgccagcccta 32179998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 48575219 - 48575134
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| | ||| ||| |||||||||| |  |||||||||  || ||| |||||||||| ||||||||| ||||||||    
T  48575219 caagttcaactcatttatttgacgaacttaattttaaattcaagttcgattcgtttggttcatgaaccaagttcaacgaattaatt 48575134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 7596419 - 7596467
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttc 74  Q
    ||||||||||||||||||||||| ||||||| |||||| ||| ||||||    
T  7596419 acttaattttcagctcaagttcggctcatttggttcataaaccaagttc 7596467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 15662975 - 15663023
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttc 74  Q
    ||||||||||||||||||||||| ||||||| || ||||||| ||||||    
T  15662975 acttaattttcagctcaagttcggctcatttggtacatgaaccaagttc 15663023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 42937100 - 42937161
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||||| |||||||||||| |||||||  ||||||||| |||||| || ||| |||||    
T  42937100 acttaattttaagctcaagttcggctcatttgattcatgaaccaagttcgacgaatcaattg 42937161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 47603001 - 47602862
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  47603001 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgt 47602902  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| || ||||||||    
T  47602901 cgaactataatcgagttggttcggttcattgtcagcccta 47602862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 7702837 - 7702975
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatctc 98  Q
    ||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||   ||||||||| |||||||||  ||||   || || |||||| ||    
T  7702837 aagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttagcttcatgaaccaagttcaacggattaaatatcgagtcgaatgtc 7702936  T
Q  99 gaactattttcgaactggtacggttcactgccagcccta 137  Q
    |||||||  ||||  |||| ||||||| |||||||||||    
T  7702937 gaactataatcgagttggttcggttcattgccagcccta 7702975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 14796590 - 14796674
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    ||||||||||||| | ||||||| |||||||||  || ||||||||  || | || |||||||||| | ||||||| ||||||||    
T  14796590 aagttcaactcatttatttaacgaacttaatttaaagttcaagttcaacttaattggttcatgaaccacgttcaacgaattaatt 14796674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 14805464 - 14805548
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    ||||||||||||| | ||||||| |||||||||  || ||||||||  || | || |||||||||| | ||||||| ||||||||    
T  14805464 aagttcaactcatttatttaacgaacttaatttaaagttcaagttcaacttaattggttcatgaaccacgttcaacgaattaatt 14805548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 15014341 - 15014381
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaa 66  Q
    |||||||||||| |||||||||| ||||||| |||||||||    
T  15014341 acttaattttcaactcaagttcggctcatttggttcatgaa 15014381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 20347685 - 20347753
Alignment:
Q  19 ttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||| |||||||||||| || ||||||| ||||||| || ||||||  || |||||| |||||||||    
T  20347685 ttaacgaacttaattttcatcttaagttcggctcatttggtacatgaatcaaattcaacgaattaattg 20347753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 30251443 - 30251491
Alignment:
Q  19 ttaacggacttaattttcagctcaagttcgtctcatttagttcatgaac 67  Q
    |||||| |||||||||| |||||||||||   |||||||||||||||||    
T  30251443 ttaacgaacttaatttttagctcaagttcaattcatttagttcatgaac 30251491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 37441325 - 37441249
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||    
T  37441325 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 37441249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 21089 - 21228
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | ||||| |  ||||||||||| |||||||||| ||| ||| |||||||||| ||||||||| ||| ||||   ||||||| |||    
T  21089 caagttcaactcatttatttaatgagcttaattttcaactcaagttcgactc-tttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtct 21187  T
Q  98 cgaactattttcgaactggtacggttcactgccagccctat 138  Q
    ||||||||||||||  |||| ||||||| || |||||||||    
T  21188 cgaactattttcgagttggttcggttcattgtcagccctat 21228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 27450720 - 27450580
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | |||||||  ||||||||| | |||||||||| ||||||  |||||||||  || |||||| ||| ||||   |||||||||||    
T  27450720 caagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaatcaaattcaacgaatcaattatcgaatcgaatct 27450621  T
Q  98 cgaactattttcgaactggtacggttcactgccagccctat 138  Q
    || |||||||||||  |||| ||||||| ||||||||||||    
T  27450620 cgcactattttcgagttggttcggttcattgccagccctat 27450580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 3801503 - 3801364
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| |  |||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||  ||  ||||   || ||||||      
T  3801503 caagttcaactcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaatta 3801404  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    |||||||| |||||  |||| ||||||| |||||||||||    
T  3801403 cgaactatattcgagttggttcggttcattgccagcccta 3801364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 34719796 - 34719657
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | |||||||  ||||||||| | |||||||||| |||||| ||||||||||  ||||||||| ||| ||||   ||||| |||||    
T  34719796 caagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaagttcatgaatcaagttcaacgaatcaattatcgaatcaaatct 34719697  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    || |||||||||||  |||| || |||| |||||||||||    
T  34719696 cgcactattttcgagttggttcgtttcattgccagcccta 34719657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 19716184 - 19716318
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattgaatcgaatctcga 100  Q
    ||||||||| |||| | |||||||  ||||||||| | || ||||||| ||||||  |||||||||  ||||||||| ||| ||||  |||||||||||     
T  19716184 caagttcaattcatttatttaacgagcttaattttaaacttaagttcgactcattaggttcatgaatcaagttcaacgaatcaatt--atcgaatctcgc 19716281  T
Q  101 actattttcgaactggtacggttcactgccagcccta 137  Q
    |||||||||||  |||| ||||||| |||||||||||    
T  19716282 actattttcgagttggttcggttcattgccagcccta 19716318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 27196078 - 27196217
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||| | | | |||||  ||||||||||| |||||||||| ||||||| |||||||||| || || ||| ||| ||||   ||||||| |||    
T  27196078 caagttcaactcctttatctaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaaatttaacgaatcaattatcgaatcgagtct 27196177  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  |||| ||||||| || ||||||||    
T  27196178 cgaactattttcgagttggttcggttcattgtcagcccta 27196217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 39407407 - 39407546
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | |||||||  ||||||||| | |||||||||| ||||||  |||||||||  ||||||||| ||| ||||   |||||||||||    
T  39407407 caagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaatcaagttcaacgaatcaattatcgaatcgaatct 39407506  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    || |||||||| ||  |||| ||||||| | |||||||||    
T  39407507 cgcactatttttgagttggttcggttcattaccagcccta 39407546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1840826 - 1840740
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||| ||||| | ||| ||| ||||||||||||||||||||||  ||||||| |||||||||| ||||||||| | |||||||    
T  1840826 caagttcagctcatttatttcacgaacttaattttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattg 1840740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 10493986 - 10494125
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaa---attaattgaatcgaatct 97  Q
    |||||||| ||||| | |||||||  ||||||||||| |||||||||| ||||||| |||  ||||| ||||||||| |   | | |||||||||||| |    
T  10493986 caagttcagctcatttatttaacgagcttaattttcaactcaagttcgactcatttggtttgtgaaccaagttcaacgaaccaattattgaatcgaatat 10494085  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    | ||||||||| ||  |||| ||||||| |||||||||||    
T  10494086 caaactatttttgagttggttcggttcattgccagcccta 10494125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 41783326 - 41783411
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| |  |||||| ||||||| || |||||||||||| ||||||| |||||||||| ||||||||| || |||||    
T  41783326 caagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcatttggttcatgaaccaagttcaacgaactaatt 41783411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 26298313 - 26298451
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctc 98  Q
    ||||||||||||| | |||||||  ||||||||| | |||||||| | ||||||  |||||||||  ||||||||| ||| ||||   ||||||||||||    
T  26298313 aagttcaactcatttatttaacgagcttaattttaaactcaagtttgactcattaggttcatgaatcaagttcaacgaatcaattatcgaatcgaatctc 26298412  T
Q  99 gaactattttcgaactggtacggttcactgccagcccta 137  Q
      |||||||| ||  |||| ||||||| |||||||||||    
T  26298413 acactatttttgagttggttcggttcattgccagcccta 26298451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38523000 - 38522925
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    |||||||| ||||| |  |||||| ||||||||||||||||||||| | ||||||| |||||||||| ||||||||    
T  38523000 caagttcagctcatttaattaacgaacttaattttcagctcaagtttggctcatttggttcatgaaccaagttcaa 38522925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 19282253 - 19282167
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||| ||||| |  |||||| || |||||||||||||||||||  ||||||| |||||||||| ||||||||| | |||||||    
T  19282253 caagttcagctcatctacttaacgaacctaattttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattg 19282167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 26299848 - 26299984
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||||| |||| | |||||||  ||||||||| | |||||||| | ||||||  |||||||||  ||||||||| ||| ||||   |||||||||||    
T  26299848 caagttcaattcatttatttaacgagcttaattttaaactcaagtttgactcattaggttcatgaatgaagttcaacgaatcaattatcgaatcgaatct 26299947  T
Q  98 cgaactattttcgaactggtacggttcactgccagcc 134  Q
    || |||||||||||  |||| ||||||| | ||||||    
T  26299948 cgcactattttcgagttggttcggttcatttccagcc 26299984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 32945122 - 32945021
Alignment:
Q  39 ctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggttcactgccagccc 135  Q
    |||||||||| ||||||| |||||||||| ||||| ||| ||| ||||   ||||||| | |||||||||||||||  |||| ||||||| || ||||||    
T  32945122 ctcaagttcgactcatttggttcatgaaccaagtttaacgaatcaattaccgaatcgagtttcgaactattttcgagttggttcggttcattgtcagccc 32945023  T
Q  136 ta 137  Q
    ||    
T  32945022 ta 32945021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 34724891 - 34724754
Alignment:
Q  3 agttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcg 99  Q
    |||||||||||| | |||||||  ||||||||| | |||||||||| ||||||  |||||||||  ||||||||| ||| ||||    |||||||||||     
T  34724891 agttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaatcaagttcaacgaatcaattatcaaatcgaatctca 34724792  T
Q  100 aactattttcgaactggtacggttcactgccagcccta 137  Q
     ||||||||| |  |||| ||||||| |||| ||||||    
T  34724791 cactattttcaagttggttcggttcattgccggcccta 34724754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 27906099 - 27906239
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  27906099 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgt 27906198  T
Q  98 cgaactattttcgaactggtacggttcactgccagccctat 138  Q
    ||||||||  ||||  |||| ||||||| ||||||||||||    
T  27906199 cgaactataatcgagttggttcggttcattgccagccctat 27906239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 2676042 - 2676083
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaac 67  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  2676042 acttaattttcagctcaagttcgactcatttggttcatgaac 2676083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 14500845 - 14500760
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    ||||||||||||||    |||||| ||||||| || |||||||||||| ||| ||| |||||||||| ||||||||| || |||||    
T  14500845 caagttcaactcattcagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaatt 14500760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 26218048 - 26218133
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||| ||||||| |  |||||| ||||||| || |||||||||||| ||| ||| |||||||||| ||||||||| || |||||    
T  26218048 caagtttaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaatt 26218133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 20190698 - 20190650
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttc 74  Q
    |||||||||| |||||||||||| ||||||| |||||||||| ||||||    
T  20190698 acttaattttgagctcaagttcggctcatttggttcatgaaccaagttc 20190650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 34857349 - 34857487
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctc 98  Q
    ||||| ||||||| | |||||||  ||||||||| | |||||||||| ||||||   ||||||||  ||||||||| ||| ||||   |||| |||||||    
T  34857349 aagtttaactcatttatttaacgagcttaattttaaactcaagttcgactcattagattcatgaatcaagttcaacgaatcaattattgaattgaatctc 34857448  T
Q  99 gaactattttcgaactggtacggttcactgccagcccta 137  Q
      |||||||||||  |||| ||||||| ||||| |||||    
T  34857449 acactattttcgagttggttcggttcattgccaacccta 34857487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 1225378 - 1225428
Alignment:
Q  27 cttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    ||||||||||| |||||||||| ||||||| |||||| ||| |||||||||    
T  1225378 cttaattttcaactcaagttcgactcatttggttcataaactaagttcaac 1225428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 30661043 - 30660961
Alignment:
Q  4 gttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||| ||||||||  |||||  |||||||||||| || || |||  |||||||||||||||||| |||||||| |||| ||||    
T  30661043 gttcgactcatataattaacaaacttaattttcaacttaaattcagctcatttagttcatgaactaagttcaataaatcaatt 30660961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 11136145 - 11136061
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| |  |||||| ||||||| || |||||||||||| ||| ||| |||| ||||| ||||||||| || |||||    
T  11136145 caagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttc-tgaaccaagttcaacgaactaatt 11136061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 24202729 - 24202774
Alignment:
Q  27 cttaattttcagctcaagttcgtctcatttagttcatgaacaaagt 72  Q
    ||||||||||| ||||||||||  ||||||||||||| ||||||||    
T  24202729 cttaattttcaactcaagttcgattcatttagttcatcaacaaagt 24202774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 34723792 - 34723707
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| | |||||||  ||||||||| | ||||| |||| ||||||  |||||||||  ||||||||| ||| ||||    
T  34723792 caagttcaactcatttatttaacgagcttaattttaaactcaaattcgactcattaggttcatgaatcaagttcaacgaatcaatt 34723707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39409141 - 39409206
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaa 66  Q
    |||||||||||||| | |||||||  ||||||||| | |||||||||| ||||||  |||||||||    
T  39409141 caagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaa 39409206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 3081857 - 3081718
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||| ||||| |  ||||||  ||||||||||| |||||||||| ||||||| |||| ||||| ||||||||| ||  ||||   ||||||| | |    
T  3081857 caagttcagctcatttaattaacgagcttaattttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgaaccaattatcgaatcgagtat 3081758  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    |||||||||||||| ||||| ||||||| |||||||||||    
T  3081757 cgaactattttcgagctggttcggttcattgccagcccta 3081718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 13312023 - 13312164
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcga--at 95  Q
    |||||||||||||| | ||||||| |||||||||||| |||||||||| ||||||| |||||||||| |||| |||  ||  ||||   |||||||  ||    
T  13312023 caagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtat 13312122  T
Q  96 ctcgaactattttcgaactggtacggttcactgccagcccta 137  Q
     |||||||||||||||  |||| ||||||| |||||||||||    
T  13312123 atcgaactattttcgagttggttcggttcattgccagcccta 13312164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 6999268 - 6999381
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    ||||||||  |||| ||||||||  ||||||||||||||||||||||  |||||||||||||| ||| ||||||||| ||||||||   ||||||| |||    
T  6999268 caagttcagttcatttgtttaacaaacttaattttcagctcaagttcagctcatttagttcattaaccaagttcaacgaattaattatcgaatcgagtct 6999367  T
Q  98 cgaactattttcga 111  Q
    | ||||||| ||||    
T  6999368 caaactattgtcga 6999381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 4441440 - 4441301
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||| ||||| | ||||||| |||||||||||| |||||||||  |||||||||||| ||||| ||||||||| |  |||||   ||||||| | |    
T  4441440 caagttcagctcatttatttaacgaacttaattttcaactcaagttcagctcatttagttcgtgaaccaagttcaacgagctaattgtcgaatcgagttt 4441341  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||| ||||  |||| ||||||| |||| ||||||    
T  4441340 cgaactattgtcgagttggttcggttcattgccggcccta 4441301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 1501866 - 1501988
Alignment:
Q  18 tttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg---aatcgaatctcgaactattttcgaact 114  Q
    ||||||| |||||||||||||||||||||||  |||||| |||||||||| ||||||||| | |||||||   |||||| | |||||| ||| ||||  |    
T  1501866 tttaacgaacttaattttcagctcaagttcggttcatttggttcatgaacgaagttcaacgagttaattgtcaaatcgagtttcgaacaattgtcgagtt 1501965  T
Q  115 ggtacggttcactgccagcccta 137  Q
    ||| ||||||| || ||||||||    
T  1501966 ggttcggttcattgtcagcccta 1501988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 17441185 - 17441298
Alignment:
Q  27 cttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggtt 123  Q
    ||||||||||| |||||||||  ||||||| |||||||||| ||||||||| ||||||||    |||||| | ||||||||||||||   |||| |||||    
T  17441185 cttaattttcaactcaagttcaactcatttggttcatgaactaagttcaacgaattaattaccaaatcgagtttcgaactattttcgggttggttcggtt 17441284  T
Q  124 cactgccagcccta 137  Q
    || ||||| |||||    
T  17441285 cattgccaacccta 17441298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 10961910 - 10961849
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||||||||||||| |||| ||||||| |||||||||| ||||||||| ||| |||||    
T  10961910 acttaattttcagctcaaattcgactcatttggttcatgaaccaagttcaacgaatcaattg 10961849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 5640366 - 5640252
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggt 122  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| |||||| || ||| ||||   |||||||||  |||||| |  ||||  |||| ||||    
T  5640366 acttaattttcagttcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggttcggt 5640267  T
Q  123 tcactgccagcccta 137  Q
    ||| |||||||||||    
T  5640266 tcattgccagcccta 5640252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 7437305 - 7437444
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaa---ttaattgaatcgaatct 97  Q
    |||||||| ||||| | |||||||  ||||||||||| || ||||||| ||||||| |||| ||||| ||||||||| ||    | || ||||||| | |    
T  7437305 caagttcagctcatttatttaacgagcttaattttcaactaaagttcgactcatttggttcgtgaaccaagttcaacgaacccattatcgaatcgagtat 7437404  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||||||||  | || ||||||| | |||||||||    
T  7437405 cgaactattttcgagttagttcggttcattaccagcccta 7437444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 9950874 - 9950826
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttc 74  Q
    |||||||||||| |||||||||| ||||||| |||||||||| ||||||    
T  9950874 acttaattttcaactcaagttcggctcatttggttcatgaaccaagttc 9950826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 10346722 - 10346861
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  10346722 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatagagtcgaatgt 10346821  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  ||||  |||||| |||||||||||    
T  10346822 cgaactataatcgatttggtttggttcattgccagcccta 10346861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 27985004 - 27984943
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    ||||||||||||| ||||||||| ||||||| |||||| ||| |||||| || ||| |||||    
T  27985004 acttaattttcagttcaagttcggctcatttggttcataaaccaagttcgacgaatcaattg 27984943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 3409323 - 3409188
Alignment:
Q  5 ttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaa 101  Q
    |||| ||||| | ||||||| ||||||||||||||||||||||   |||||| |||||||||| ||||||||| | ||||||   ||||||| | |||||    
T  3409323 ttcagctcatttatttaacgaacttaattttcagctcaagttcagttcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtttcgaa 3409224  T
Q  102 ctattttcgaactggtacggttcactgccagcccta 137  Q
    ||||| ||||  |||| ||||||| |||||||||||    
T  3409223 ctattgtcgagttggttcggttcattgccagcccta 3409188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 44740622 - 44740486
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||| ||||| ||||||||| |||||||||| |||||||||||  ||| ||| |||||||||| ||||||||| | ||||||   ||||||| ||     
T  44740622 caagttcagctcatttgtttaacgaacttaatttttagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcc 44740523  T
Q  98 cgaactattttcgaactggtacggttcactgccagcc 134  Q
    | ||||||| ||||  |||| ||||||| ||||||||    
T  44740522 caaactattgtcgagttggttcggttcattgccagcc 44740486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 27464686 - 27464571
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggt 122  Q
    ||||||||||||  ||||||||| ||||||| |||||||||| || |||||||||| ||||   ||||| | |||||||||||||||||  |||| ||||    
T  27464686 acttaattttcaattcaagttcgactcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagtctcgaactattttcgagttggttcggt 27464587  T
Q  123 tcactgccagccctat 138  Q
    ||| || |||||||||    
T  27464586 tcattgtcagccctat 27464571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 11007111 - 11007026
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| | |||||||  ||||||||||| |||||||||| ||||||| |||| ||||| ||||||||| ||| ||||    
T  11007111 caagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgaatcaatt 11007026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 40458922 - 40459061
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaa---attaattgaatcgaatct 97  Q
    |||||||| ||||| | |||||||  ||||||||||| |||||||||| ||||||| |||| ||||| |||||||||||   | | |||||||||| | |    
T  40458922 caagttcagctcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaaccaagttcaacaaaccaattattgaatcgagtat 40459021  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    | |||||||||| |  |||| ||||||| || ||||||||    
T  40459022 caaactattttcaagttggttcggttcattgtcagcccta 40459061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 2578081 - 2578166
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    ||||| ||||||| | ||||||| | ||||||||||||||||||||  |||||||  ||||||||  ||||||||||| |||||||    
T  2578081 aagtttaactcatttatttaacgaatttaattttcagctcaagttcagctcatttgattcatgaatcaagttcaacaagttaattg 2578166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 2647113 - 2647028
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    ||||||||||| || |  |||||| |||||||||| |||||||||||| ||| ||| |||||||||| ||||||||| || |||||    
T  2647113 caagttcaacttatttagttaacgaacttaatttttagctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaatt 2647028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 34116312 - 34116227
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||| ||||  | |||| || |||||||||| |||||||||||| ||||||| |||||||||| |||||| |||||| ||||    
T  34116312 caagttcagctcaattatttagcgaacttaattttaagctcaagttcggctcatttggttcatgaactaagttcgacaaatcaatt 34116227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 24844804 - 24844729
Alignment:
Q  2 aagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    ||||||| ||||| | |||| || | ||||||||||||||||||||  ||||||| |||||||||| |||||||||    
T  24844804 aagttcagctcatttatttatcgaatttaattttcagctcaagttcagctcatttggttcatgaaccaagttcaac 24844729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 29806950 - 29807046
Alignment:
Q  44 gttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||| ||||||| |||| | ||| ||||||||| ||| ||||   ||||||| ||| |||||||||||||| |||| ||||||| |||||||||||    
T  29806950 gttcggctcatttggttcgtaaaccaagttcaacgaatcaattatcgaatcgagtcttgaactattttcgaattggttcggttcattgccagcccta 29807046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 27634672 - 27634811
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  27634672 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaactaagttcaacggattaaatatcgagtcgaatgt 27634771  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| |||||||||||    
T  27634772 cgaactataatcgagttggttcggttcattgccagcccta 27634811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 38409685 - 38409644
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaac 67  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  38409685 acttaattttcagctcaagttcggctcatttggttcatgaac 38409644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1094458 - 1094533
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    ||||||| |||||| | || ||||  ||||||||||| |||||||||| ||||||| |||||||||| || |||||    
T  1094458 caagttcgactcatttattcaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaaattcaa 1094533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 27902551 - 27902492
Alignment:
Q  28 ttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||||||||||||||||  |||||| |||||||||| |||||| || ||| |||||    
T  27902551 ttaattttcagctcaagttcggttcattttgttcatgaaccaagttcgacgaatcaattg 27902492  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 20203825 - 20203767
Alignment:
Q  29 taattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||||||||||| ||| | ||||||| |||||||||| ||||||||| ||| |||||    
T  20203825 taattttcagctcaggtttgactcatttggttcatgaaccaagttcaacgaatcaattg 20203767  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 41332257 - 41332345
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcga 111  Q
    |||||||||||||||||| |||  |||| || ||| |||||| ||||||||||| ||||||   ||||||| | ||||||||| |||||    
T  41332257 acttaattttcagctcaaattcaactcaattggtttatgaaccaagttcaacaagttaattgtcgaatcgagtttcgaactatattcga 41332345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 2328430 - 2328345
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| | ||| | ||  |||||||||| |||||||| | ||||||||  ||||||| |||||| ||| ||||||||    
T  2328430 caagttcaactcatttatttgaagggtttaattttcaactcaagtttgactcatttaaatcatgaataaagtttaacgaattaatt 2328345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 33831496 - 33831635
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| || ||||||  ||||   || || |||||| |    
T  33831496 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaaattcaacggattagatatcgagtcgaatgt 33831595  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| |||||||||||    
T  33831596 cgaactataatcgagttggttcggttcattgccagcccta 33831635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 34064706 - 34064813
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||  ||||   ||||| |||||| |    
T  34064706 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaactaagttcaacggattagatattgagtcgaatgt 34064805  T
Q  98 cgaactat 105  Q
    ||||||||    
T  34064806 cgaactat 34064813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26436355 - 26436431
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    |||||||| ||||| |  |||||| ||||||||||||||||| ||||  ||| ||  |||||||||| |||||||||    
T  26436355 caagttcagctcatttaattaacgaacttaattttcagctcacgttcagctcgttaggttcatgaaccaagttcaac 26436431  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 3307935 - 3308074
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||  ||||| | ||||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||||| || | ||||||   ||||||| |      
T  3307935 caagttcggctcatttatttaacgaacttaattttctgctcaagttcggctcatttggttcatgaactaagttctacgagttaattgtcgaatcgagttc 3308034  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||| ||||  |||| ||||||| |||||||||||    
T  3308035 cgaactattgtcgagttggttcggttcattgccagcccta 3308074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 43384831 - 43384922
Alignment:
Q  37 agctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatctcgaactattttcgaactggtacggttca 125  Q
    |||||||||||  ||||||| |||||||||| || |||||| ||||||||   |||||||||||||||||||||||||  |||| |||||||    
T  43384831 agctcaagttcaactcatttggttcatgaaccaacttcaacgaattaattatcgaatcgaatctcgaactattttcgagttggttcggttca 43384922  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 1091728 - 1091838
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| ||||| ||| |||||||||| | |||| ||||| ||| ||| |||||||||  ||||||||| ||||||||   ||||||| |||    
T  1091728 caagttcaactcatttgtttgacgaacttaattttaaactcaggttcgactcgtttggttcatgaatcaagttcaacgaattaattatcgaatcgagtct 1091827  T
Q  98 cgaactatttt 108  Q
    | |||||||||    
T  1091828 caaactatttt 1091838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27189221 - 27189148
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttc 74  Q
    |||||||||||||  |  || ||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  27189221 caagttcaactcaattagttgacgaacttaattttcagctcaagttcgactcatttggttcatgaaccaagttc 27189148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 453484 - 453623
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaatta---attgaatcgaatct 97  Q
    |||||||||||||| |  |||||| |||||||||||| ||||||| |  ||| ||  |||||||||| |||||||||  ||||   || || |||||| |    
T  453484 caagttcaactcatttaattaacgaacttaattttcaactcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgt 453583  T
Q  98 cgaactattttcgaactggtacggttcactgccagcccta 137  Q
    ||||||||  ||||  |||| ||||||| |||||||||||    
T  453584 cgaactataatcgagttggttcggttcattgccagcccta 453623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 34655036 - 34655121
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||| ||||||| |  |||||  ||||||| || |||||||||||| ||| ||| |||||||||| |||||||||||| |||||    
T  34655036 caagtttaactcatttagttaacaaacttaatctttagctcaagttcgactcgtttggttcatgaactaagttcaacaaactaatt 34655121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 43967511 - 43967596
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt 86  Q
    |||||||||||||| |  |||||| ||||||| || |||||||||||| ||| ||| |||||||||| || |||||| || |||||    
T  43967511 caagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaaattcaacgaactaatt 43967596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 459
Target Start/End: Original strand, 11716003 - 11716208
Alignment:
Q  254 ttaccaaccccaataggaccaatcaggaaagacaatgtcaagagcttcattctttccacaataactaaaaataggtggtggtgtcacagcttctggtcct 353  Q
    ||||||||||||  ||| |||||||||||| ||||||||||| |  || |  | ||||||||||  |||||||||||| |||| ||||  |||||| |||    
T  11716003 ttaccaaccccagaaggtccaatcaggaaaaacaatgtcaagtgtatcttcatctccacaataatgaaaaataggtggaggtgacacattttctggccct 11716102  T
Q  354 tcatatcnnnnnnnatccaccacagctctatcaccagtctcaaacaatagctccaaatctggtactctcccagggtacaaccttaaaagttgcactattc 453  Q
    | | ||         |||||||||  | ||||||||   | ||||| |||||||||||| |||| | | |||||||| |||||||||||||| |  ||||    
T  11716103 tgaaattttttcttgtccaccacatttttatcaccacattgaaacattagctccaaatcaggtatttttccagggtataaccttaaaagttgtaaaattc 11716202  T
Q  454 cccata 459  Q
    ||||||    
T  11716203 cccata 11716208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 34516164 - 34516214
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    ||||||||||||||||||||||| ||||||| ||| |||||  ||||||||    
T  34516164 acttaattttcagctcaagttcggctcatttggttgatgaatcaagttcaa 34516214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 23181181 - 23181222
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaac 67  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||    
T  23181181 acttaattttcagttcaagttcggctcatttggttcatgaac 23181222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11161573 - 11161649
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaac 77  Q
    |||||||| ||||| |  |||||| |||||||||||||||||||| |  ||| ||  |||||||||| |||||||||    
T  11161573 caagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 11161649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 26735 - 26680
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaat 81  Q
    ||||||||||||||||||||||| |||||||  ||||||||| |||||||||||||    
T  26735 acttaattttcagctcaagttcgactcatttgattcatgaaccaagttcaacaaat 26680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 906 - 778
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattgaatcgaatctcga 100  Q
    |||||||||||||| | |||||||  ||||||||||| | ||| |||  ||||||| |||||||||| |||||||||         ||||||| |||| |    
T  906 caagttcaactcatttatttaacgagcttaattttcaacccaaattcaactcatttggttcatgaaccaagttcaac---------gaatcgagtctcaa 816  T
Q  101 actattttcgaactggtacggttcactgccagccctat 138  Q
    |||||||||||| |||| ||||||| || |||||||||    
T  815 actattttcgaattggttcggttcattggcagccctat 778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 51441 - 51314
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | ||||||   ||||||||| |  ||| ||||| ||||||| ||||| |||| ||||||||| ||||| ||   ||| |||||||    
T  51441 caagttcaactcatttatttaacaagcttaattttaaaatcacgttcgactcatttggttcacgaactaagttcaacgaattatttaccgaaccgaatct 51342  T
Q  98 cgaactattttcgaactggtacggttca 125  Q
    |||||||||||||| || || |||||||    
T  51341 cgaactattttcgagctagttcggttca 51314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 7422 - 7374
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttc 74  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  7422 acttaattttcagctcaagttcggctcatttggttcatgaaccaagttc 7374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 96281 - 96408
Alignment:
Q  1 caagttcaactcatatgtttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaatt---gaatcgaatct 97  Q
    |||||||||||||| | |||||||  ||||||||| | || ||||| | ||||||| ||||| |||  ||||||||  ||||| ||   ||| |||||||    
T  96281 caagttcaactcatttatttaacgagcttaattttgaacttaagttggactcatttggttcacgaattaagttcaatgaattatttaacgaaccgaatct 96380  T
Q  98 cgaactattttcgaactggtacggttca 125  Q
    |||||||||||||| || || |||||||    
T  96381 cgaactattttcgagctagttcggttca 96408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 124595 - 124545
Alignment:
Q  26 acttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaa 76  Q
    |||||||  |||||||||||||| ||||||| |||||||||| ||||||||    
T  124595 acttaataatcagctcaagttcgactcatttggttcatgaaccaagttcaa 124545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 10008 - 10076
Alignment:
Q  19 ttaacggacttaattttcagctcaagttcgtctcatttagttcatgaacaaagttcaacaaattaattg 87  Q
    |||||| |||||||||||| || ||||||| ||||||| || ||||||  || |||||| |||||||||    
T  10008 ttaacgaacttaattttcatcttaagttcggctcatttggtacatgaatcaaattcaacgaattaattg 10076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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