View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_52 (Length: 250)
Name: NF1295_low_52
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_52 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 34350819 - 34351072
Alignment:
| Q |
9 |
caataatatttctcccttttttcactttcttgttcaacatgtttagttcaatttatgtaaaatttgttactcacttaacacttctaacacattttcatat |
108 |
Q |
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| T |
34350819 |
caataatatttctcccttttttcactttcttgttcaacatgtttagttcaatttatgtaaaatttgttactcacttaacacttctaacacattttcatat |
34350918 |
T |
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| Q |
109 |
agtttattccttcgtc------------catttccccctttccattttgaatggattccatattcaaattttttaaaatatgcaaaaaattatccttctt |
196 |
Q |
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| T |
34350919 |
agtttattccttcgtccatttctcagttcatttccccctttccattttgaatggattccatattcaaattttttaaaatatgcaaaaaattatccttctt |
34351018 |
T |
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| Q |
197 |
ttttgaatggtaaaacctattaggtatcccaccaagaagtcacaaggcgtacaa |
250 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
34351019 |
ttttgaatggtaaaacatattaggtataccaccaagaagtcacaaggcgtacaa |
34351072 |
T |
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