View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_54 (Length: 250)
Name: NF1295_low_54
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12220110 - 12219885
Alignment:
| Q |
1 |
catatacaattttagacaattcgtgtgctagccctgttcaccattgacaaggagtaacaaagatattaatgtatttagatagaactaaaaactaactcct |
100 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |
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| T |
12220110 |
catatacaattttagacaattcgtgtgctaacactgttcaccattgacaaggagtaataaagattctaatgtatttagatagaactaaaaact-actcct |
12220012 |
T |
|
| Q |
101 |
tttcatatcttgatatatgcgacttttctaatgttgattaggccgctagtataaaagac--agaatcaatatcaaaaatcgtctctgtaaattttgca-- |
196 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||| |
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| T |
12220011 |
tttcagatcttgatatatgcgacttttctaatgttgattaggccactagtataaaagacagagaatcagcatcagaaatcgtctctgtaaattttgcata |
12219912 |
T |
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| Q |
197 |
-tacttcacacctttgactcggataat |
222 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12219911 |
ttacttcacacctttgactcggataat |
12219885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 7425424 - 7425622
Alignment:
| Q |
1 |
catatacaattttagacaattcgtgtgctagccctgttcaccattgacaaggagtaacaaagatattaatgtatttagatagaactaaaaactaact-cc |
99 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | || |
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| T |
7425424 |
catatacaattttagacaattcgtgtgctaacactgttcaccattgacaaggagtaaagaagatattaatgtatttagatggaactaaaaactaattccc |
7425523 |
T |
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| Q |
100 |
ttttcatatcttgatatatgcgacttttctaatgttgattaggccgctagtataaaagacagaatcaatatcaaaaatcgtctctgtaaattttgcata |
198 |
Q |
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| T |
7425524 |
tctgcagatattgatatatgcctcttttctgatgttgattgggccactggtataaaagacagaatcagtatcagaaatcgtctctatcaattttgcata |
7425622 |
T |
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