View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1295_low_58 (Length: 241)
Name: NF1295_low_58
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_58 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 22905405 - 22905637
Alignment:
| Q |
19 |
tatttggcatcaatcaagatgaacacaagccgaaatgccattgaaaacaatacttcatttttatatcctctctgttgagaatagt--tatataggtctaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
22905405 |
tatttggcatcaatcaagatgaacacaagccgaaatgccattgaaaacaatacttcatttttatatcctctctgttgagaatagttatatataggcctaa |
22905504 |
T |
|
| Q |
117 |
cttccaaattaaagtttttatattttctttgtgagagttaacttggaatag--------ttatgagcttatttttatatcctctcttgttgagagtaatc |
208 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22905505 |
cttccaaattgaagtttttatattttctttgtgagagttaacatggaatagttatgaacttatgagcttatttttatatcctctcttgttgagagtaatc |
22905604 |
T |
|
| Q |
209 |
atttgagaaaacattatattcaaacacaaactt |
241 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
22905605 |
atttgagaaaacattgtattcaaacacaaactt |
22905637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 17182885 - 17182924
Alignment:
| Q |
181 |
tttatatcctctcttgttgagagtaatcatttgagaaaac |
220 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
17182885 |
tttatatcctttcttgttgagagttatcatttgagaaaac |
17182924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University