View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1295_low_7 (Length: 572)

Name: NF1295_low_7
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1295_low_7
NF1295_low_7
[»] chr3 (6 HSPs)
chr3 (30-259)||(25717268-25717497)
chr3 (335-525)||(25716997-25717188)
chr3 (360-414)||(55121179-55121233)
chr3 (360-415)||(18093783-18093838)
chr3 (357-415)||(11534835-11534893)
chr3 (357-415)||(26331220-26331278)
[»] chr2 (11 HSPs)
chr2 (360-415)||(9733546-9733601)
chr2 (356-413)||(12488073-12488130)
chr2 (359-408)||(17621087-17621136)
chr2 (360-415)||(27279492-27279547)
chr2 (360-415)||(30429074-30429129)
chr2 (360-415)||(41517444-41517499)
chr2 (362-415)||(11021062-11021116)
chr2 (360-414)||(12487998-12488052)
chr2 (361-414)||(32516215-32516268)
chr2 (362-407)||(34138783-34138828)
chr2 (355-415)||(14725291-14725351)
[»] chr8 (5 HSPs)
chr8 (357-415)||(27988081-27988139)
chr8 (357-415)||(28045383-28045441)
chr8 (357-410)||(30542546-30542599)
chr8 (360-415)||(4079543-4079598)
chr8 (356-412)||(33072618-33072674)
[»] chr1 (7 HSPs)
chr1 (360-452)||(28437261-28437353)
chr1 (360-415)||(24419613-24419668)
chr1 (376-415)||(44661788-44661827)
chr1 (356-415)||(49166688-49166747)
chr1 (361-411)||(5700118-5700168)
chr1 (366-415)||(37925789-37925838)
chr1 (365-425)||(40462771-40462830)
[»] chr6 (1 HSPs)
chr6 (360-414)||(3846436-3846490)
[»] chr5 (4 HSPs)
chr5 (362-414)||(20269523-20269575)
chr5 (361-415)||(7065665-7065719)
chr5 (361-415)||(8567956-8568010)
chr5 (357-410)||(11089378-11089431)
[»] chr4 (5 HSPs)
chr4 (360-415)||(38562206-38562261)
chr4 (360-415)||(52840273-52840328)
chr4 (362-415)||(41476912-41476965)
chr4 (360-452)||(48601112-48601205)
chr4 (362-417)||(15844096-15844152)
[»] chr7 (2 HSPs)
chr7 (371-415)||(15996132-15996176)
chr7 (360-415)||(44615188-44615244)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 25717497 - 25717268
Alignment:
Q  30 cttctttgggatgcaaactgtgagttcttttataaaccaaaccacaacaagtcacagttaacggataacgaagtaaatgtcatatatcgaaagaaaatga 129  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25717497 cttctttgggatccaaacagtgagttcttttataaaccaaaccacaacaagtcacaattaacggataacgaagtaaatgtcatatatcgaaagaaaatga 25717398  T
Q  130 attaaggttggtgatgatcaattaaaaactatagtgatgtttttcctatttaaataacattggagggagttcattgtaatttttccgatatcaaataata 229  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25717397 attaaggttggtgatgatcaattaaaaactatagtgatgtttctcctatttaaataacattggagggagttcattgtaatttttccgatatcaaataata 25717298  T
Q  230 ttattttgtctcttattattagtccatttg 259  Q
    ||||||||||||||||||||||||||||||    
T  25717297 ttattttgtctcttattattagtccatttg 25717268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 335 - 525
Target Start/End: Complemental strand, 25717188 - 25716997
Alignment:
Q  335 gtcttaagttaaacacatactctctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatcggatttgtatttaattcaa 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||     
T  25717188 gtcttaagttaaacacatactctctggtcacatttacaaacaaaaaacaattatttaagtttattgaataactaatgtatcggatttgtatttaattcag 25717089  T
Q  435 atatattagttattcaattaaccaaaaaata-nnnnnnnnattataattgtgattagaaggagtatatacggtatccttatctgttaatttt 525  Q
    ||||||||||||||||||||| |||||||||         |||||||||||||| ||| |||||||||||||||||||||| ||||||||||    
T  25717088 atatattagttattcaattaatcaaaaaatatttttttttattataattgtgatcagagggagtatatacggtatccttatttgttaatttt 25716997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 55121179 - 55121233
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtat 414  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||||| ||||||||    
T  55121179 ggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtat 55121233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 18093783 - 18093838
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| ||||||||||||| | ||||| | ||||||||||||||||||||    
T  18093783 ggtcacatttataaacaaaaaacaaatttttaaatacattgaataattaatgtatc 18093838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 11534893 - 11534835
Alignment:
Q  357 tctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||| |||||| |||||||| |||||| ||||  ||||||||||| ||||||||||    
T  11534893 tctggtcgcatttataaacaaaatacaattttttagattcattgaatatttaatgtatc 11534835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 26331220 - 26331278
Alignment:
Q  357 tctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    |||||||||||||| || |||||||||||| | || ||||||||||| | |||||||||    
T  26331220 tctggtcacatttataagcaaaaaacaattttctaggttcattgaatgactaatgtatc 26331278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 9733601 - 9733546
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||    
T  9733601 ggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatc 9733546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 12488130 - 12488073
Alignment:
Q  356 ctctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgta 413  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||| ||| |||||||    
T  12488130 ctctggtcacatttacaagcaaaaaacaattttttaggttcattgagtaactaatgta 12488073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 17621087 - 17621136
Alignment:
Q  359 tggtcacatttacaaacaaaaaacaattatttaagttcattgaataatta 408  Q
    |||||||||||| ||||||||||||| | ||||| |||||||||||||||    
T  17621087 tggtcacatttataaacaaaaaacaactttttaaattcattgaataatta 17621136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 27279492 - 27279547
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| || ||||||| |||| |||| ||||||||||||| |||||||||    
T  27279492 ggtcacatttataagcaaaaaataattttttaggttcattgaataactaatgtatc 27279547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 30429074 - 30429129
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| || |||||||||| | |||| ||||||| |||||||||||||||    
T  30429074 ggtcacatttataagcaaaaaacaactttttaggttcattcaataattaatgtatc 30429129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 41517499 - 41517444
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| || ||||||| || | ||||||| ||||||||||||||||||||    
T  41517499 ggtcacatttataagcaaaaaataactttttaagtacattgaataattaatgtatc 41517444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 11021062 - 11021116
Alignment:
Q  362 tcacatttacaaacaaaaaa-caattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||| |||||||||| || ||||||| |||||||||||| ||||||||||    
T  11021062 tcacatttataaacaaaaaaacacttatttaggttcattgaatagttaatgtatc 11021116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 12487998 - 12488052
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtat 414  Q
    |||||||||||||| || ||||||||| |||| ||||||||| ||| ||||||||    
T  12487998 ggtcacatttacaagcagaaaacaattttttaggttcattgagtaactaatgtat 12488052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 32516268 - 32516215
Alignment:
Q  361 gtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtat 414  Q
    |||||||||| ||  |||| |||||| ||||| |||||||||||||||||||||    
T  32516268 gtcacatttataagtaaaacacaattttttaaattcattgaataattaatgtat 32516215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 34138828 - 34138783
Alignment:
Q  362 tcacatttacaaacaaaaaacaattatttaagttcattgaataatt 407  Q
    ||||||||| ||||||||||||||| |||| ||| |||||||||||    
T  34138828 tcacatttataaacaaaaaacaattttttaggtttattgaataatt 34138783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 14725351 - 14725291
Alignment:
Q  355 tctctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| | || |||||||||| |||| ||||  | ||||||||||||||||||||    
T  14725351 tctctggtcacgtatataaacaaaaaataattttttatatacattgaataattaatgtatc 14725291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 27988081 - 27988139
Alignment:
Q  357 tctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    |||||||||||||| || |||||||||| | |||||||||||||||||| |||||||||    
T  27988081 tctggtcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatc 27988139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 28045383 - 28045441
Alignment:
Q  357 tctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    |||||||||||||| || |||||||||| | |||||||||||||||||| |||||||||    
T  28045383 tctggtcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatc 28045441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 30542599 - 30542546
Alignment:
Q  357 tctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaat 410  Q
    |||||||| ||||| ||| ||||||||||| ||||||| |||||||||||||||    
T  30542599 tctggtcatatttataaataaaaaacaattttttaagtacattgaataattaat 30542546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 4079598 - 4079543
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||| ||||| ||||||||||||||| |||| |||||||||||||| ||| ||||    
T  4079598 ggtcatatttataaacaaaaaacaattttttaggttcattgaataataaatttatc 4079543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 33072618 - 33072674
Alignment:
Q  356 ctctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgt 412  Q
    |||| ||||||||||||| ||||||| || | |||| ||||||||||||| ||||||    
T  33072618 ctctagtcacatttacaagcaaaaaataactttttaggttcattgaataactaatgt 33072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 452
Target Start/End: Complemental strand, 28437353 - 28437261
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatcggatttgtatttaattcaaatatattagttattcaat 452  Q
    ||||| |||||||| |||||||||||| ||| |||  ||||||||| ||||||||| ||||| ||  || || | ||||||||||||||||||    
T  28437353 ggtcatatttacaatcaaaaaacaatttttttagtaaattgaataactaatgtatccgatttataactagttgatatatattagttattcaat 28437261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 24419668 - 24419613
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| || |||||||||| | |||| || ||||||||||||||||||||    
T  24419668 ggtcacatttataagcaaaaaacaactttttaggtacattgaataattaatgtatc 24419613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 415
Target Start/End: Original strand, 44661788 - 44661827
Alignment:
Q  376 aaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  44661788 aaaaaacaattttttaagttcattgaataactaatgtatc 44661827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 49166747 - 49166688
Alignment:
Q  356 ctctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||||||| || |||||||||| | ||||  | ||||||||||||||||||||    
T  49166747 ctctggtcacatttataagcaaaaaacaactttttagttacattgaataattaatgtatc 49166688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 5700168 - 5700118
Alignment:
Q  361 gtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatg 411  Q
    |||||||||| || |||||||||| | ||||||| ||||||||||||||||    
T  5700168 gtcacatttataagcaaaaaacaactttttaagtacattgaataattaatg 5700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 37925789 - 37925838
Alignment:
Q  366 atttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||| |||||||||| |||| |||| ||||||||||||| |||||||||    
T  37925789 atttataaacaaaaaagaattttttatgttcattgaataactaatgtatc 37925838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 425
Target Start/End: Complemental strand, 40462830 - 40462771
Alignment:
Q  365 catttacaaacaaaaaacaattatttaagttcattgaataattaatgtatcggatttgtat 425  Q
    |||||| ||| ||||||||||| |||||||| |||||||||||||| |||| || ||||||    
T  40462830 catttataaataaaaaacaatt-tttaagtttattgaataattaatatatctgacttgtat 40462771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 3846436 - 3846490
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtat 414  Q
    ||||||||||| || ||||||| |||| |||||||||||||||||| ||||||||    
T  3846436 ggtcacatttataagcaaaaaataattttttaagttcattgaataaataatgtat 3846490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 20269575 - 20269523
Alignment:
Q  362 tcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtat 414  Q
    ||||||||| ||||||||||||||| ||||  | |||||||||||||||||||    
T  20269575 tcacatttataaacaaaaaacaattttttagatacattgaataattaatgtat 20269523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 7065719 - 7065665
Alignment:
Q  361 gtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    |||||||||| || |||||| ||| | ||||| ||||||||||||||||||||||    
T  7065719 gtcacatttataagcaaaaatcaactttttaaattcattgaataattaatgtatc 7065665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 8568010 - 8567956
Alignment:
Q  361 gtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    |||||||||| ||||||||||  ||| ||||| | ||||||||||||||||||||    
T  8568010 gtcacatttataaacaaaaaatgattttttaaatacattgaataattaatgtatc 8567956  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 11089431 - 11089378
Alignment:
Q  357 tctggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaat 410  Q
    |||||||||||||| ||  |||||| |||| ||||||||||| |||||||||||    
T  11089431 tctggtcacatttataagtaaaaaataattttttaagttcatcgaataattaat 11089378  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 38562261 - 38562206
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| || |||||||||||| ||||  | ||||||||||||||||||||    
T  38562261 ggtcacatttataagcaaaaaacaattttttagatacattgaataattaatgtatc 38562206  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 52840273 - 52840328
Alignment:
Q  360 ggtcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| || ||||||| |||| ||||||| |||| |||||||||||||||    
T  52840273 ggtcacatttataagcaaaaaataattttttaagtacattaaataattaatgtatc 52840328  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 41476965 - 41476912
Alignment:
Q  362 tcacatttacaaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||| ||||||||||||||| ||||| |||||| ||||  |||||||||    
T  41476965 tcacatttataaacaaaaaacaattttttaaattcatttaatatctaatgtatc 41476912  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 452
Target Start/End: Original strand, 48601112 - 48601205
Alignment:
Q  360 ggtcacatttacaaacaaaaaac-aattatttaagttcattgaataattaatgtatcggatttgtatttaattcaaatatattagttattcaat 452  Q
    ||||||||||| ||||||||||| |||| ||||  || ||||||||| ||||||||| ||  | ||| ||| || |||| ||||||||||||||    
T  48601112 ggtcacatttataaacaaaaaactaattttttatatttattgaataactaatgtatctgacctatatgtaaatcgaataaattagttattcaat 48601205  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 15844096 - 15844152
Alignment:
Q  362 tcacatttacaaacaaaaaacaattatttaa-gttcattgaataattaatgtatcgg 417  Q
    ||||||||| |||||||||| | || ||| | |||||||||||||||||||||||||    
T  15844096 tcacatttataaacaaaaaatattttttttatgttcattgaataattaatgtatcgg 15844152  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 15996132 - 15996176
Alignment:
Q  371 caaacaaaaaacaattatttaagttcattgaataattaatgtatc 415  Q
    |||| ||||||||||| |||| || ||||||||||||||||||||    
T  15996132 caaaaaaaaaacaattttttaggtacattgaataattaatgtatc 15996176  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 44615188 - 44615244
Alignment:
Q  360 ggtcacatttacaaacaaaaaa-caattatttaagttcattgaataattaatgtatc 415  Q
    ||||||||||| || ||||||| || || |||||||||| |||||||||||||||||    
T  44615188 ggtcacatttataagcaaaaaaacatttttttaagttcactgaataattaatgtatc 44615244  T

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