View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1296-Insertion-1 (Length: 468)

Name: NF1296-Insertion-1
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1296-Insertion-1
NF1296-Insertion-1
[»] chr1 (1 HSPs)
chr1 (8-468)||(34831743-34832211)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Complemental strand, 34832211 - 34831743
Alignment:
Q  8 caaaatagtgatgatgaaatgaatccatgaataaacaacacatcttctttaacttcacctgttcatcataatgtttaagtcatttttccacattaattaa 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34832211 caaaatagtgacgatgaaatgaatccatgaataaacaacacatcttctttaacttcacctgttcatcataatgtataagtcatttttccacattaattaa 34832112  T
Q  108 caaagagtttggtcacatttttactttacattttatggaaatacataaacttttacacggacatctaactagaaatttttatttttctgtca-------- 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  34832111 caaagagtttggtcacatttttactttacattttatggaaatacataaacttttacacggacatctaactagaaatttttatttttctgtcatacactca 34832012  T
Q  200 tacatcaattttacaatactgcaaaaataaggtgacgtggcaaaataatatattttcattaaatgtcatcataaaatataatttatgttaatgttatata 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34832011 tacatcaattttacaatactgcaaaaataaggtgacgtggcaaaataatatattttcattaaatgtcatcataaaatataatttatgttaatgttatata 34831912  T
Q  300 tcatttaaatacttttttctatnnnnnnnnnnnnnnnnngaaacaagagtttgttgggtcatgaaggaagtttctgagatcatgctttgagcaatgatac 399  Q
    ||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34831911 tcatttaaatacttttttctataaaaaaaatataaaaaagaaacaagagtttgttgggtcatgaaggaagtttctgagatcatgctttgagcaatgatac 34831812  T
Q  400 aagtgtgatcagacgttacatcttcacacaaaatcttagacattgaacatataaatcttttcatttgta 468  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34831811 aagtgtgatcagacattacattttcacacaaaatcttagacattgaacatataaatcttttcatttgta 34831743  T

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