View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12960_high_4 (Length: 265)
Name: NF12960_high_4
Description: NF12960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12960_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 35425849 - 35426075
Alignment:
| Q |
21 |
ttgtgaccttcctttatctttatctctcacacaattttaatagctttctcattctattaaaaaatgattttcttttaatcaatatgcaaaagtatttgat |
120 |
Q |
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| T |
35425849 |
ttgtgaccttcctttatctttatctctcacacaattttaatagctttctcattctattaaaaaatgattttcttttaatcaatatgcataagtatttgat |
35425948 |
T |
|
| Q |
121 |
aaatactccattccttaatttctattctaaagaattgttgttgtttgaatagagtatggatcaggtggtatggtatcaccacagggagatatctatagct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35425949 |
aaatactccattccttaatttctattctaaagaattgttgttgttttaatagagtatggatcaggtggtatggtatcaccacagggagatatctatagct |
35426048 |
T |
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| Q |
221 |
atggaattgttctgttagagatgctta |
247 |
Q |
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| T |
35426049 |
atggaattgttctgttagagatgctta |
35426075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 35376865 - 35377116
Alignment:
| Q |
1 |
ttaaaatgtctttcatgtgtttgtgaccttcctttatctttatctctcacacaattttaatagctttctcattctattaaaaaatgattttcttttaatc |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35376865 |
ttaaaatgtctttcatgtgcttgtgaccttcctttatctttatctctcacacaattttaatagctttctcattatattaaaaaatgattttcttttaatc |
35376964 |
T |
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| Q |
101 |
aatatgcaaaagtatttgataaatactccattccttaa-----tttctattctaaagaattgttgttgtttgaatagagtatggatcaggtggtatggta |
195 |
Q |
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| T |
35376965 |
attatgcacctgtatttgatatattctccattgcttaattttttttttcttctaaagaatggtctttgtttgaatagagaatggatcaggtggtatggta |
35377064 |
T |
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| Q |
196 |
tcaccacagggagatatctatagctatggaattgttctgttagagatgctta |
247 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35377065 |
tcaccacagggagatatctatagctatggaattcttctgttagagatgctta |
35377116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 35367365 - 35367525
Alignment:
| Q |
85 |
tgattttcttttaatcaatatgcaaaagtatttgataaatactccattccttaatttctattctaaagaattgttgttgtttgaatagagtatggatcag |
184 |
Q |
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|||||| ||| |||||| |||||| ||||||||||| |||||||| | |||||| | | |||||||||||||||| |||||||||| |||||| ||| |
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| T |
35367365 |
tgatttgcttataatcagtatgcatcagtatttgatatatactccaaccgttaattattttgctaaagaattgttgttatttgaatagaatatggagcag |
35367464 |
T |
|
| Q |
185 |
gtggtatggtatcaccacagggagatatctatagctatggaattgttctgttagagatgct |
245 |
Q |
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||| | ||||| |||||||||||| | || |||| ||| ||| | |||||||||||||| |
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| T |
35367465 |
gtgttccagtatctccacagggagatgtttacagctttgggattctactgttagagatgct |
35367525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 35755390 - 35755506
Alignment:
| Q |
131 |
ttccttaatttctattctaaagaattgttgttgtttgaatagagtatggatcaggtggtatggtatcaccacagggagatatctatagctatggaattgt |
230 |
Q |
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||||||||||| | | |||||||||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||| || |||||||| ||| | |
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| T |
35755390 |
ttccttaatttttttcttaaagaattgttgttgtttgaaaagagtatggagcaggtggtccggtatcaccggagggagatatttacagctatgggattct |
35755489 |
T |
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| Q |
231 |
tctgttagagatgctta |
247 |
Q |
| |
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||||| || ||||||| |
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| T |
35755490 |
gctgttggaaatgctta |
35755506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 35371109 - 35371161
Alignment:
| Q |
193 |
gtatcaccacagggagatatctatagctatggaattgttctgttagagatgct |
245 |
Q |
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||||||||||| |||||||||||||||| ||| ||| |||||||||||||||| |
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| T |
35371109 |
gtatcaccacatggagatatctatagctttgggattcttctgttagagatgct |
35371161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 35437668 - 35437737
Alignment:
| Q |
159 |
tgttgtttgaatagagtatggatcaggtggtatggtatcaccacagggagatatctatagctatggaatt |
228 |
Q |
| |
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| T |
35437668 |
tgttgttggaacagagtatggagtaggtggcaaagtatcaccacaaggagatatttacagctatggaatt |
35437737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 35386583 - 35386671
Alignment:
| Q |
155 |
ttgttgttgtttgaatagagtatggatcaggtggtatggtatcaccacagggagatatctatagctatggaattgttctgttagagatg |
243 |
Q |
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| T |
35386583 |
ttgttgttgtttgaaaagagtacggagaaggtgttccagtatcaccaaagggagatatctacagctttgggattcttctactagagatg |
35386671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 35411229 - 35411317
Alignment:
| Q |
155 |
ttgttgttgtttgaatagagtatggatcaggtggtatggtatcaccacagggagatatctatagctatggaattgttctgttagagatg |
243 |
Q |
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| T |
35411229 |
ttgttgttgtttgaaaagagtacggagaaggtgttccagtatcaccacggggagatatctacagctttgggattcttctactagagatg |
35411317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 10415297 - 10415206
Alignment:
| Q |
154 |
attgttgttgtttgaatagagtatggatcaggtggtatggtatcaccacagggagatatctatagctatggaattgttctgttagagatgct |
245 |
Q |
| |
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|||||||||||| || |||||| ||| |||||| | |||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |
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| T |
10415297 |
attgttgttgttcgagaagagtacggaacaggtgttccagtatcaccacagggagatatctatagctttgggattcttctgttagagatgct |
10415206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 245
Target Start/End: Complemental strand, 10420271 - 10420092
Alignment:
| Q |
65 |
tttctcattctattaaaaaatgattttcttttaatcaatatgcaaaagtatttgataaatactccattccttaatttctattctaaagaattgttgttgt |
164 |
Q |
| |
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|||||||||||| ||| || |||||| ||| ||| || ||||| ||||||||||| |||||||| |||||||| | | |||| ||||||||||| | |
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| T |
10420271 |
tttctcattctaataataa-tgatttgcttataaacagtatgcgtcagtatttgatatatactccaacccttaattattttgctaatgaattgttgttat |
10420173 |
T |
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| Q |
165 |
ttgaatagagtatggatcaggtggtatggtatcaccacagggagatatctatagctatggaattgttctgttagagatgct |
245 |
Q |
| |
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||||||||| |||||| |||||| | ||||| || ||||||||| | || |||| ||| ||| | ||||||||||||| |
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| T |
10420172 |
ttgaatagaatatggagcaggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgct |
10420092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 29622812 - 29622760
Alignment:
| Q |
193 |
gtatcaccacagggagatatctatagctatggaattgttctgttagagatgct |
245 |
Q |
| |
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||||||||||||||||||||||| |||| ||| ||| |||||||||||||||| |
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| T |
29622812 |
gtatcaccacagggagatatctacagctttggcattcttctgttagagatgct |
29622760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 1154283 - 1154335
Alignment:
| Q |
193 |
gtatcaccacagggagatatctatagctatggaattgttctgttagagatgct |
245 |
Q |
| |
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||||||||||||||||||||||| |||| ||| ||| |||||||||||||||| |
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| T |
1154283 |
gtatcaccacagggagatatctacagctttgggattcttctgttagagatgct |
1154335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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