View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12960_low_2 (Length: 401)

Name: NF12960_low_2
Description: NF12960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12960_low_2
NF12960_low_2
[»] chr2 (4 HSPs)
chr2 (155-383)||(12042914-12043132)
chr2 (292-378)||(12047924-12048010)
chr2 (180-231)||(12048052-12048104)
chr2 (163-206)||(10582343-10582386)
[»] chr7 (2 HSPs)
chr7 (17-157)||(6944948-6945088)
chr7 (17-157)||(48942574-48942714)
[»] chr4 (1 HSPs)
chr4 (17-157)||(18302002-18302142)
[»] chr3 (2 HSPs)
chr3 (17-157)||(13234168-13234308)
chr3 (162-230)||(15800055-15800124)
[»] chr8 (2 HSPs)
chr8 (161-231)||(30198065-30198136)
chr8 (161-206)||(30919420-30919465)
[»] chr1 (1 HSPs)
chr1 (158-205)||(49520009-49520056)
[»] chr5 (3 HSPs)
chr5 (159-199)||(39646270-39646310)
chr5 (161-204)||(8082213-8082255)
chr5 (158-206)||(38340506-38340553)
[»] chr6 (1 HSPs)
chr6 (168-205)||(30863968-30864004)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 155 - 383
Target Start/End: Complemental strand, 12043132 - 12042914
Alignment:
Q  155 acagggattcaatatgagattcatgtccaatatagatacacactagagattcctttcattgaattcaattttgtatctcgataagattcgcatcacatgt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12043132 acagggattcaatatgagattcatgtccaatatagatacacactagagattcctttcattgaattcaattttgtatctcgataagattcgcatcacatgt 12043033  T
Q  255 atcctaagttggacatggtcacagtaccaaacataaaaggatcattcattcattccttcatacttcaaacaaaaataatagcaagctatcaattcacatt 354  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12043032 atcctaagttggacatggtc----------acataaaaggatcattcattcattccttcatacttcaaacaaaaataatagcaagctatcaattcacatt 12042943  T
Q  355 atcatggaagcaactaaacagtaattcac 383  Q
    |||| ||||||||||||||||||||||||    
T  12042942 atcacggaagcaactaaacagtaattcac 12042914  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 12048010 - 12047924
Alignment:
Q  292 aggatcattcattcattccttcatacttcaaacaaaaataatagcaagctatcaattcacattatcatggaagcaactaaacagtaa 378  Q
    ||||||||||||||||||||||||  ||||||||||||||| | ||| |||||||||| || | ||| |||||||| ||||||||||    
T  12048010 aggatcattcattcattccttcatttttcaaacaaaaataacaacaaactatcaattcccaatctcaaggaagcaattaaacagtaa 12047924  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 12048104 - 12048052
Alignment:
Q  180 tccaatat-agatacacactagagattcctttcattgaattcaattttgtatc 231  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  12048104 tccaatatgagatacacactagagactcctatcattgaattcaattttgtatc 12048052  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 10582343 - 10582386
Alignment:
Q  163 tcaatatgagattcatgtccaatatagatacacactagagattc 206  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||    
T  10582343 tcaagatgagattcatgttcaaaatagatacacactagagattc 10582386  T

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Target: chr7 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 6944948 - 6945088
Alignment:
Q  17 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6944948 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 6945047  T
Q  117 ggtcaaaggatcagagattcattggattatcaaatgataca 157  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6945048 ggtcaaaggatcagagattcattggattatcaaatgataca 6945088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 48942714 - 48942574
Alignment:
Q  17 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48942714 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 48942615  T
Q  117 ggtcaaaggatcagagattcattggattatcaaatgataca 157  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48942614 ggtcaaaggatcagagattcattggattatcaaatgataca 48942574  T

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Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 18302142 - 18302002
Alignment:
Q  17 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18302142 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 18302043  T
Q  117 ggtcaaaggatcagagattcattggattatcaaatgataca 157  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18302042 ggtcaaaggatcagagattcattggattatcaaatgataca 18302002  T

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Target: chr3 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 13234308 - 13234168
Alignment:
Q  17 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234308 aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt 13234209  T
Q  117 ggtcaaaggatcagagattcattggattatcaaatgataca 157  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13234208 ggtcaaaggatcagagattcattggattatcaaatgataca 13234168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 15800124 - 15800055
Alignment:
Q  162 ttcaatatgagattcatgtccaatatagatacacactagagattcctttc-attgaattcaattttgtat 230  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||| | || ||||  |||||||||||||    
T  15800124 ttcaatatgagattcatgtccaaaatagatacacattagggattcgtatcgattgggttcaattttgtat 15800055  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 30198136 - 30198065
Alignment:
Q  161 attcaatatgagattcatgtccaatatagatacacactagagattcctttc-attgaattcaattttgtatc 231  Q
    ||||||||||||||| |||| ||| ||||||| ||||||||||||| |||| ||||| |||||||| |||||    
T  30198136 attcaatatgagatttatgttcaaaatagatagacactagagattcgtttcgattgagttcaatttagtatc 30198065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 30919420 - 30919465
Alignment:
Q  161 attcaatatgagattcatgtccaatatagatacacactagagattc 206  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||||    
T  30919420 attcaagatgagattcatgtccaatatagatgcacactaaagattc 30919465  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 49520009 - 49520056
Alignment:
Q  158 gggattcaatatgagattcatgtccaatatagatacacactagagatt 205  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  49520009 gggattcgagatgagattcatgtccaaaatagatacacactagagatt 49520056  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 39646310 - 39646270
Alignment:
Q  159 ggattcaatatgagattcatgtccaatatagatacacacta 199  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  39646310 ggattcaagatgagattcatgttcaatatagatacacacta 39646270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 8082213 - 8082255
Alignment:
Q  161 attcaatatgagattcatgtccaatatagatacacactagagat 204  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  8082213 attcaagatgagattcatgtccaa-atagatacacactagagat 8082255  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 38340506 - 38340553
Alignment:
Q  158 gggattcaatatgagattcatgtccaatatagatacacactagagattc 206  Q
    ||||||||  ||| ||||||||||||| |||||||||||||||||||||    
T  38340506 gggattcacaatgggattcatgtccaa-atagatacacactagagattc 38340553  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 30863968 - 30864004
Alignment:
Q  168 atgagattcatgtccaatatagatacacactagagatt 205  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30863968 atgagattcatgtccaa-atagatacacactagagatt 30864004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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