View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12960_low_3 (Length: 397)
Name: NF12960_low_3
Description: NF12960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12960_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 208 - 386
Target Start/End: Original strand, 41589109 - 41589284
Alignment:
| Q |
208 |
actgctgttactgctattactactactcttccttcttcttccatccagcatgagtatcaacaaaactacaactttgtggatagccctaacttcagtgatt |
307 |
Q |
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| T |
41589109 |
actgctgttactgctattactactactcttccttc---ttccatccagcatgagtatcaacaaaactacaactttgtggatagccctaacttcagtgatt |
41589205 |
T |
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| Q |
308 |
atagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaactacaattacaacccttt |
386 |
Q |
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| T |
41589206 |
atagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaactacaattacaacccttt |
41589284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 41588922 - 41589082
Alignment:
| Q |
18 |
caatatgttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacactcag |
117 |
Q |
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| T |
41588922 |
caatatgttccaacatcatgaacatgaagtgtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacactcag |
41589021 |
T |
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| Q |
118 |
ttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
178 |
Q |
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| T |
41589022 |
ttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
41589082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 41556280 - 41556440
Alignment:
| Q |
18 |
caatatgttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacactcag |
117 |
Q |
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| T |
41556280 |
caatatgttccaacatcatgaacatgaggagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagaatacactatg |
41556379 |
T |
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| Q |
118 |
ttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
178 |
Q |
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| T |
41556380 |
ttccaagattcttttgctcttcaactcactgagaaatcatttcatgatgttattgttcaca |
41556440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 41569977 - 41570137
Alignment:
| Q |
18 |
caatatgttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacactcag |
117 |
Q |
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| T |
41569977 |
caatatgttccaacacaatgaacatgatgggtcttccaatgctcttggttatataaaccgatttctcatggaagaagactttgaaaaagaatacactatg |
41570076 |
T |
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| Q |
118 |
ttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
178 |
Q |
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| T |
41570077 |
ttccaagattcctttgctcttcaacttactgagaaatcatttcatgatgttattgttcaca |
41570137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 267 - 386
Target Start/End: Original strand, 41556520 - 41556639
Alignment:
| Q |
267 |
acaaaactacaactttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatac |
366 |
Q |
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| T |
41556520 |
acaaaactacaactatgtgcatagccctaacttcagtgattatagtttcagcagtggcagcactagctcctttgaacctgatccaattatagactcatac |
41556619 |
T |
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| Q |
367 |
aactacaattacaacccttt |
386 |
Q |
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| T |
41556620 |
aactataataacaacccttt |
41556639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 41579046 - 41579143
Alignment:
| Q |
81 |
tctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
178 |
Q |
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| T |
41579046 |
tctcatggaagaagactttgaaaaggagtacactatgttccaagattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcaca |
41579143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 381
Target Start/End: Original strand, 41570240 - 41570352
Alignment:
| Q |
269 |
aaaactacaactttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaa |
368 |
Q |
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| T |
41570240 |
aaaactacaaatttgtgcatagccctgacatcagtgattatagtttcagcagtggtagcactagctcctttgaacttgaaccaattatagagacatacaa |
41570339 |
T |
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| Q |
369 |
ctacaattacaac |
381 |
Q |
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| T |
41570340 |
ctacaattacaac |
41570352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 41579173 - 41579251
Alignment:
| Q |
278 |
actttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattat |
356 |
Q |
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| T |
41579173 |
actttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattat |
41579251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 41588858 - 41588900
Alignment:
| Q |
50 |
cttccactgttcttggttctataaaccaatttctcatggaaga |
92 |
Q |
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| T |
41588858 |
cttccactgttcttggttttataaacaaatttctcatggaaga |
41588900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 386
Target Start/End: Original strand, 41582725 - 41582755
Alignment:
| Q |
356 |
tagactcatacaactacaattacaacccttt |
386 |
Q |
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| T |
41582725 |
tagactcatacaactacaattacaacccttt |
41582755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 41556217 - 41556258
Alignment:
| Q |
51 |
ttccactgttcttggttctataaaccaatttctcatggaaga |
92 |
Q |
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||||||| ||||||||| ||||||| |||||||||||||||| |
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| T |
41556217 |
ttccactattcttggttttataaacaaatttctcatggaaga |
41556258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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