View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12960_low_6 (Length: 263)
Name: NF12960_low_6
Description: NF12960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12960_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 36331902 - 36331674
Alignment:
| Q |
18 |
ggttggtatgccggtgaatttacgaagaactggcacgcatattcggtcgtagacagggatgataatgactaagaaaccaattgggatgattggcaaggat |
117 |
Q |
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| T |
36331902 |
ggttggtatgccggtgaatttacgaagaactggcacgcatattcggtcgtagacagggatgataatgactaagaaaccaattgggatgattggcaaggat |
36331803 |
T |
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| Q |
118 |
ggtggtgggatgttgaaatgtttggtaattcttgtgtccattgtgaagccttgctggactgagaaggtttgaagctgtgctaagcaaagagtcattatga |
217 |
Q |
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| T |
36331802 |
ggtggtgggatgttgaaatgtttggtgattcttgtgtccattgtgaagccttgttggactgagaaggtttgaagctgtgctaagcaaagagtcattatga |
36331703 |
T |
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| Q |
218 |
ttgtgcagcagaatattggaatcatgctt |
246 |
Q |
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| T |
36331702 |
ttgtgcaacagaatattggaatcatgctt |
36331674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 36324641 - 36324413
Alignment:
| Q |
18 |
ggttggtatgccggtgaatttacgaagaactggcacgcatattcggtcgtagacagggatgataatgactaagaaaccaattgggatgattggcaaggat |
117 |
Q |
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| T |
36324641 |
ggttggtatgccagtgaatttacggagaagtggcacgcagattcggtcgtagaaagggattataaagattaagaaaacaactgggatgattggtaaggat |
36324542 |
T |
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| Q |
118 |
ggtggtgggatgttgaaatgtttggtaattcttgtgtccattgtgaagccttgctggactgagaaggtttgaagctgtgctaagcaaagagtcattatga |
217 |
Q |
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| T |
36324541 |
gctggtgggatgttgaaatgtttggtgattcttgtgtccattgtgaagccttgttggactgaaaaggtttgaagctgtgctaagcaaagagtcattatga |
36324442 |
T |
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| Q |
218 |
ttgtgcagcagaatattggaatcatgctt |
246 |
Q |
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| T |
36324441 |
ttgtacagaagaatactgggatcatgctt |
36324413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 5459903 - 5459676
Alignment:
| Q |
18 |
ggttggtatgccggtgaatttacgaagaactggcacgcatattcggtcgtagacagggatgataatgactaagaaaccaattgggatgattggcaaggat |
117 |
Q |
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| T |
5459903 |
ggttggaataccggtgaatttacgtataacaggaacgaaaatgcggtcgtagataggtacgagaatgattaagaacatgattgggatgaatgggagggat |
5459804 |
T |
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| Q |
118 |
ggtggtgggatgttgaaatgtttggtaattcttgtgtccattgtgaagccttgctggactgagaaggtttgaagctgtgctaagcaaagagtcattatga |
217 |
Q |
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| T |
5459803 |
gcgggtgggatgtgaaaatgtttggtgacttttgtgtccatggtgtagccttgttcgattgaaaaggtttggagttgagctaggcaaagggtcattataa |
5459704 |
T |
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| Q |
218 |
ttgtgcagcagaatattggaatcatgct |
245 |
Q |
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|||| || ||||||||||||| |||||| |
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| T |
5459703 |
ttgtacaacagaatattggaaccatgct |
5459676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 45661043 - 45660986
Alignment:
| Q |
166 |
ccttgctggactgagaaggtttgaagctgtgctaagcaaagagtcattatgattgtgc |
223 |
Q |
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| T |
45661043 |
ccttgctgtactgagaatgtttgaagctgtgctaaacaagtgttcattatgattgtgc |
45660986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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