View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12960_low_8 (Length: 224)

Name: NF12960_low_8
Description: NF12960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12960_low_8
NF12960_low_8
[»] chr5 (11 HSPs)
chr5 (1-216)||(35376484-35376699)
chr5 (1-216)||(35423743-35423958)
chr5 (87-216)||(35754972-35755101)
chr5 (3-216)||(35410753-35410960)
chr5 (87-216)||(35386170-35386299)
chr5 (3-84)||(35370327-35370408)
chr5 (3-208)||(35437093-35437292)
chr5 (3-208)||(35366940-35367139)
chr5 (99-202)||(35388441-35388544)
chr5 (175-216)||(10716906-10716947)
chr5 (175-216)||(10746981-10747022)
[»] chr1 (3 HSPs)
chr1 (3-216)||(10409893-10410106)
chr1 (100-216)||(10415590-10415706)
chr1 (101-208)||(10420485-10420592)
[»] chr7 (1 HSPs)
chr7 (87-216)||(29623031-29623160)
[»] chr2 (3 HSPs)
chr2 (3-216)||(30663102-30663309)
chr2 (3-216)||(30671782-30671989)
chr2 (3-216)||(30626151-30626358)
[»] chr3 (1 HSPs)
chr3 (3-216)||(1153826-1154033)
[»] chr8 (1 HSPs)
chr8 (127-206)||(13564816-13564895)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 35376484 - 35376699
Alignment:
Q  1 ttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcac 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35376484 ttaaggccattgtttttgagttcatgcctagtgggaatctggaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcac 35376583  T
Q  101 acaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||    
T  35376584 acaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaagccaagcaat 35376683  T
Q  201 gttcttcttgatgatg 216  Q
    ||||||||||||||||    
T  35376684 gttcttcttgatgatg 35376699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 35423743 - 35423958
Alignment:
Q  1 ttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35423743 ttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcac 35423842  T
Q  101 acaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||| |||||||||    
T  35423843 acaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaat 35423942  T
Q  201 gttcttcttgatgatg 216  Q
    ||||||||||||||||    
T  35423943 gttcttcttgatgatg 35423958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 35754972 - 35755101
Alignment:
Q  87 aatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatg 186  Q
    ||||||||  ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||     
T  35754972 aatctcaacctcacacaaaggttagacattgctcttgatgtagctcatgcattggattatcttcacaatgatacagaacaagtcgtagttcactgtgata 35755071  T
Q  187 ttaagccaagcaatgttcttcttgatgatg 216  Q
    ||||||||||||||||||||||||||||||    
T  35755072 ttaagccaagcaatgttcttcttgatgatg 35755101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 35410753 - 35410960
Alignment:
Q  3 aaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacac 102  Q
    ||||| |||||||||||||| ||||||| |||||||||||||||  | ||||||| ||||||||       ||||  |||||  ||||||||  ||||||    
T  35410753 aaggctattgtttttgagttaatgcctaatgggaatctagaaaagtttttgcatgataacgaagg------gtctgaaaatcataatctcaacctcacac 35410846  T
Q  103 aaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgt 202  Q
    ||||||||||||||||||| || |||||||||||| | ||||||||||||||||| | ||| ||||||||||||||||||||| ||||||| ||||| ||    
T  35410847 aaaggttagacattgctcttgatgtagctcatgcacttgattatcttcacaatgagacagagcaagctgtagttcactgtgatcttaagccgagcaacgt 35410946  T
Q  203 tcttcttgatgatg 216  Q
    ||||||||| ||||    
T  35410947 tcttcttgacgatg 35410960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 35386170 - 35386299
Alignment:
Q  87 aatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatg 186  Q
    ||||||||  ||||| ||||||||||||||||||| || |||||||||||| | ||||||||||||||||||| ||| ||||| |||||||||||||||     
T  35386170 aatctcaacctcacataaaggttagacattgctcttgatgtagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatc 35386269  T
Q  187 ttaagccaagcaatgttcttcttgatgatg 216  Q
    ||||||||||||| ||||||||||| ||||    
T  35386270 ttaagccaagcaacgttcttcttgacgatg 35386299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 35370327 - 35370408
Alignment:
Q  3 aaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatc 84  Q
    ||||| |||||||||||||||||||| | ||||| | |||||||| ||||||||||||||||||| ||||||||||||||||    
T  35370327 aaggctattgtttttgagttcatgcccaatgggagtttagaaaacatgttgcatggtaacgaagaacatgagtctagaaatc 35370408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 35437093 - 35437292
Alignment:
Q  3 aaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacac 102  Q
    ||||| || |||||||| ||||||||||  |||| |||||||  | |||||||   ||| ||| ||| ||||||||||||||| |||||||       ||    
T  35437093 aaggctatagtttttgaattcatgcctatggggagtctagaaggcttgttgcacaataatgaacatcttgagtctagaaatctaaatctcag------ac 35437186  T
Q  103 aaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgt 202  Q
    ||||||||    |||||||||| ||||| ||||||||||||||||||||| || ||    |  |||||||||||||||||||| |||||||||| |||||    
T  35437187 aaaggttaagtgttgctctcgatgtagcccatgcattggattatcttcaccataattcccatgaagctgtagttcactgtgatattaagccaagtaatgt 35437286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 35366940 - 35367139
Alignment:
Q  3 aaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacac 102  Q
    ||||| ||||||||||||||||||||||  || | ||||||||| ||  |||||| ||||||||       |||| ||||||  |||||||   ||| ||    
T  35366940 aaggctattgtttttgagttcatgcctaagggaagtctagaaaagcttctgcatgataacgaagg------gtctggaaatcataatctcagcctcagac 35367033  T
Q  103 aaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgt 202  Q
    | ||  | ||||||||||| || |||||||||||| | |||||||||||||||| || |||  || |  |||||||||||||| ||||||| ||||| ||    
T  35367034 acagagttgacattgctcttgatgtagctcatgcactcgattatcttcacaatggtacagagaaatccatagttcactgtgatattaagccgagcaacgt 35367133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 35388441 - 35388544
Alignment:
Q  99 acacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagca 198  Q
    ||||||||||||   ||||||||| | |||||||   | |||||||||||||||||| || | || |||||||||||||| |||||| ||||||||| ||    
T  35388441 acacaaaggttaagtattgctctcaatgtagctcgcacgttggattatcttcacaataattttgagcaagctgtagttcattgtgatattaagccaaaca 35388540  T
Q  199 atgt 202  Q
    ||||    
T  35388541 atgt 35388544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 10716947 - 10716906
Alignment:
Q  175 ttcactgtgatgttaagccaagcaatgttcttcttgatgatg 216  Q
    |||| |||||| |||||||||||||||| |||||||||||||    
T  10716947 ttcattgtgatcttaagccaagcaatgtccttcttgatgatg 10716906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 10747022 - 10746981
Alignment:
Q  175 ttcactgtgatgttaagccaagcaatgttcttcttgatgatg 216  Q
    ||||||||||| | |||||||||||||| |||||||||||||    
T  10747022 ttcactgtgatctcaagccaagcaatgtccttcttgatgatg 10746981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 10410106 - 10409893
Alignment:
Q  3 aaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacac 102  Q
    ||||| |||||||||||||||||||||| ||||| | | |||||||| |||||||||||  |||| || |||||||||||||||||||||||||||||||    
T  10410106 aaggctattgtttttgagttcatgcctaatgggagtttggaaaaccttttgcatggtaataaagaacacgagtctagaaatctgaatctcaatttcacac 10410007  T
Q  103 aaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgt 202  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||  ||| ||||  || |||||  |||  ||||| |||||||||||    
T  10410006 aaaggttagacattgttctcaacgtagctcatgcattggattatcttcacattgatgcagagcaagtggtggttcatagtggcgttaaaccaagcaatgt 10409907  T
Q  203 tcttcttgatgatg 216  Q
    |||||| |||||||    
T  10409906 tcttctcgatgatg 10409893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 216
Target Start/End: Complemental strand, 10415706 - 10415590
Alignment:
Q  100 cacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaa 199  Q
    |||||||||||||||| ||||| ||  ||||||||||| | ||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||    
T  10415706 cacaaaggttagacatcgctcttgatctagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatgttaagtcaagcaa 10415607  T
Q  200 tgttcttcttgatgatg 216  Q
     ||||||||||| ||||    
T  10415606 cgttcttcttgacgatg 10415590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 10420592 - 10420485
Alignment:
Q  101 acaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaat 200  Q
    ||||||| | ||||||||||| || |||||||||||| |  ||||||||||||||| || ||| |||||  |||||||||||||| ||||||| |||||     
T  10420592 acaaagggttgacattgctcttgatgtagctcatgcacttaattatcttcacaatggtacagagcaagccatagttcactgtgatattaagccgagcaac 10420493  T
Q  201 gttcttct 208  Q
    ||||||||    
T  10420492 gttcttct 10420485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 29623160 - 29623031
Alignment:
Q  87 aatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatg 186  Q
    ||||||||  ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29623160 aatctcaacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatg 29623061  T
Q  187 ttaagccaagcaatgttcttcttgatgatg 216  Q
    ||||||||||||||||||||||||||||||    
T  29623060 ttaagccaagcaatgttcttcttgatgatg 29623031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 30663102 - 30663309
Alignment:
Q  3 aaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacac 102  Q
    ||||| ||||||||||||||||||||||  |||| ||||||||| ||  |||| | |||||||||      |||| ||| ||  |||||||   ||||||    
T  30663102 aaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaaga------gtctggaattcataatctcagcctcacac 30663195  T
Q  103 aaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgt 202  Q
    ||||| | ||||||||||| || ||||||||||||||||||||||||||||||| ||  ||  | | |||||||||||||||||| || |||| ||||||    
T  30663196 aaagggttgacattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgt 30663295  T
Q  203 tcttcttgatgatg 216  Q
    ||||||||||||||    
T  30663296 tcttcttgatgatg 30663309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 30671782 - 30671989
Alignment:
Q  3 aaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacac 102  Q
    ||||| ||||||||||||||||||||||  |||| ||||||||| ||  |||| | |||||||||      |||| ||| ||  |||||||   ||||||    
T  30671782 aaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaaga------gtctggaattcataatctcagcctcacac 30671875  T
Q  103 aaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgt 202  Q
    ||||| | ||||||||||| || ||||||||||||||||||||||||||||||| ||  ||  | | |||||||||||||||||| || |||| ||||||    
T  30671876 aaagggttgacattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgt 30671975  T
Q  203 tcttcttgatgatg 216  Q
    ||||||||||||||    
T  30671976 tcttcttgatgatg 30671989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 30626151 - 30626358
Alignment:
Q  3 aaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacac 102  Q
    ||||| ||||||||||||||||||||||  |||| ||||||||| ||  |||| | |||||||||      |||| ||| ||  |||||||   ||||||    
T  30626151 aaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaaga------gtctggaattcataatctcagcctcacac 30626244  T
Q  103 aaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgt 202  Q
    ||||| | ||||||||||| || ||||||||||||||||||||||||||||||| ||  ||  | | ||||||||| |||||||| || |||| ||||||    
T  30626245 aaagggttgacattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcaatgtgatgtgaaaccaaacaatgt 30626344  T
Q  203 tcttcttgatgatg 216  Q
    ||||||||||||||    
T  30626345 tcttcttgatgatg 30626358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 1153826 - 1154033
Alignment:
Q  3 aaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctgaatctcaatttcacac 102  Q
    ||||| ||||||||||||||||||||||  |||| |||||||||  ||||||||| ||  ||||       ||||  |||||  ||||||||  |||||     
T  1153826 aaggctattgtttttgagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagg------gtctgaaaatcacaatctcaagctcacaa 1153919  T
Q  103 aaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgt 202  Q
    ||||| ||||  ||||||| ||  ||||||||||| | |||| |||||||||||||| | | |||| |  ||||||||||||| ||||||||||||||||    
T  1153920 aaagggtagattttgctcttgatatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgt 1154019  T
Q  203 tcttcttgatgatg 216  Q
    ||||||||||||||    
T  1154020 tcttcttgatgatg 1154033  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 13564816 - 13564895
Alignment:
Q  127 tagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttctt 206  Q
    ||||| |||||||||||||||||||||||||| |||| |||||  ||| ||| |||||||||||||| ||||| ||||||    
T  13564816 tagcttatgcattggattatcttcacaatgatgtagagcaagccttaggtcattgtgatgttaagccgagcaacgttctt 13564895  T

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