View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12961_high_1 (Length: 623)
Name: NF12961_high_1
Description: NF12961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12961_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 124 - 604
Target Start/End: Complemental strand, 6242819 - 6242340
Alignment:
| Q |
124 |
gctctccgcctattaaaacagctagcttaagaagcacgtcagaagccctatatatctttctcccttcaagtttatcttaatcaaaaccccattactcaca |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
6242819 |
gctctccgcctattaaaacagctagcttaagaagcacgtcagaagccctatatatctttctcccttcaagtttatcttaatcaaaaccc-atcactcaca |
6242721 |
T |
|
| Q |
224 |
aaacctctctaaatttaatcagttacgcatcttctacactctgaaaacacactctttacttcaaatctttcttcgccgctgtcgttcatcgccactgtcg |
323 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6242720 |
aaacctctctaaaattaatcagttacgcatcttctacactctgaaaacacactctttacttcaaatctttcttcgccgctgtcgttcatcgccactgtcg |
6242621 |
T |
|
| Q |
324 |
tcttttgtttgtatagttttatccatgtcgtcgtcgactcattctctaggtgtgaatatccataacttcattagctttatcggtggatattttctttgca |
423 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6242620 |
tcttttgtttgtatagttttatccatgccgtcgtcgactcattctcaaggtatgaatatccataacttcattagctttatcggtggatattttctttgca |
6242521 |
T |
|
| Q |
424 |
tatgctttatatttctatccttgtgctttatatttttatcgttaggttttcttgaaactttttcttctattttcacacggtataggagggttacttaatt |
523 |
Q |
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| T |
6242520 |
tatgctttatatttctatccttgtgctttatatttttatcgttaggttttcttgaaactttttcttctattttcacacggtataggagggttacttaatt |
6242421 |
T |
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| Q |
524 |
agtatgcagtttaactattactatataatacgagaggttacttaccaacaattggattgatgcaagtggtaaaggatttgg |
604 |
Q |
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| T |
6242420 |
agtatgcagtttaactattactatataatacgagaggttacttaccaacaattggattgatgcaagtggtaaaggatttgg |
6242340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 6227189 - 6227138
Alignment:
| Q |
323 |
gtcttttgtttgtatagttttatccatgtcgtcgtcgactcattctctaggt |
374 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
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| T |
6227189 |
gtcttttgtttgtttagttttatccatgttgtcgtcgactcattctcaaggt |
6227138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 6227119 - 6227060
Alignment:
| Q |
447 |
tgctttatatttttatcgttaggttttcttgaaactttttcttctattttcacacggtat |
506 |
Q |
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| T |
6227119 |
tgctttaagtttttatcgttatgctttcttgtaactttttcttcggttttcacacggtat |
6227060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 425
Target Start/End: Complemental strand, 6234302 - 6234256
Alignment:
| Q |
379 |
atatccataacttcattagctttatcggtggatattttctttgcata |
425 |
Q |
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| T |
6234302 |
atatccataactttattagctttatcggttgatattttacttgcata |
6234256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6242932 - 6242899
Alignment:
| Q |
1 |
aaattgcgtcaaattaaaaaattagaataataaa |
34 |
Q |
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| T |
6242932 |
aaattgcgtcaaattaaagaattagaataataaa |
6242899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 449 - 506
Target Start/End: Complemental strand, 6234255 - 6234196
Alignment:
| Q |
449 |
ctttatatttttatcgttaggttttcttgaaactttttct--tctattttcacacggtat |
506 |
Q |
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|||| |||||||||||||| | ||||||| |||||||||| ||| |||||||||||||| |
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| T |
6234255 |
ctttctatttttatcgttatgctttcttgtaactttttcttatctgttttcacacggtat |
6234196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 381 - 512
Target Start/End: Original strand, 17544057 - 17544186
Alignment:
| Q |
381 |
atccataacttcattagctttatcggtggatattttctttgcatatgctttatatttctatccttgtgctttatatttttatcgttaggttttcttgaaa |
480 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| || ||||||||| |||||||||||| |||| || || |
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| T |
17544057 |
atccataacttcattagctttatcggtagatattttctttgc--atgctttatattattatcgttatgctttata-ttttatcgttagatttttttctaa |
17544153 |
T |
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| Q |
481 |
ctttttcttctat-tttcacacggtataggagg |
512 |
Q |
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||||||||| ||| ||||||||||||| ||||| |
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| T |
17544154 |
ctttttcttatatgtttcacacggtatgggagg |
17544186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 17543974 - 17544025
Alignment:
| Q |
323 |
gtcttttgtttgtatagttttatccatgtcgtcgtcgactcattctctaggt |
374 |
Q |
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||||||||||||| |||||||||| ||||| ||||||||||| |||| |||| |
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| T |
17543974 |
gtcttttgtttgtttagttttatcaatgtcttcgtcgactcactctcaaggt |
17544025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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