View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12961_high_3 (Length: 335)

Name: NF12961_high_3
Description: NF12961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12961_high_3
NF12961_high_3
[»] chr7 (27 HSPs)
chr7 (1-319)||(7653416-7653734)
chr7 (20-147)||(35496540-35496667)
chr7 (21-147)||(27123286-27123412)
chr7 (15-135)||(28770501-28770621)
chr7 (13-145)||(44537355-44537487)
chr7 (15-147)||(35731299-35731430)
chr7 (20-135)||(28663106-28663221)
chr7 (14-146)||(21727367-21727499)
chr7 (20-151)||(43234798-43234928)
chr7 (42-147)||(39320971-39321076)
chr7 (41-148)||(25886181-25886288)
chr7 (20-122)||(14651357-14651459)
chr7 (20-147)||(3692889-3693017)
chr7 (38-135)||(43224072-43224169)
chr7 (45-149)||(26239533-26239637)
chr7 (41-135)||(34117859-34117953)
chr7 (42-118)||(9718983-9719059)
chr7 (20-135)||(35923474-35923585)
chr7 (15-109)||(8920665-8920759)
chr7 (42-135)||(10200593-10200685)
chr7 (66-147)||(27337709-27337790)
chr7 (44-148)||(40753938-40754041)
chr7 (47-86)||(48488172-48488211)
chr7 (77-147)||(18801052-18801122)
chr7 (111-148)||(7968617-7968654)
chr7 (23-148)||(29711463-29711588)
chr7 (15-75)||(17157731-17157791)
[»] chr4 (39 HSPs)
chr4 (20-151)||(51834922-51835053)
chr4 (20-147)||(37138129-37138256)
chr4 (47-147)||(35777693-35777793)
chr4 (15-151)||(45900111-45900247)
chr4 (20-151)||(7852511-7852642)
chr4 (13-147)||(50427001-50427135)
chr4 (20-147)||(7444352-7444480)
chr4 (38-147)||(8297883-8297992)
chr4 (20-129)||(36702814-36702919)
chr4 (13-149)||(47995697-47995833)
chr4 (45-147)||(50341859-50341961)
chr4 (20-135)||(31429301-31429416)
chr4 (17-147)||(24229610-24229740)
chr4 (11-149)||(37440836-37440974)
chr4 (5-151)||(53014158-53014304)
chr4 (14-135)||(31174612-31174733)
chr4 (65-151)||(49084412-49084499)
chr4 (17-147)||(34391671-34391801)
chr4 (44-145)||(41462063-41462164)
chr4 (39-151)||(24175385-24175496)
chr4 (80-147)||(51736366-51736433)
chr4 (20-89)||(23605634-23605703)
chr4 (45-147)||(42222967-42223069)
chr4 (45-151)||(49400620-49400726)
chr4 (20-128)||(8261139-8261247)
chr4 (20-128)||(8274556-8274664)
chr4 (58-135)||(27953046-27953123)
chr4 (45-147)||(20394650-20394750)
chr4 (42-118)||(13585250-13585326)
chr4 (15-109)||(7628009-7628102)
chr4 (49-147)||(25115260-25115357)
chr4 (41-83)||(37060625-37060667)
chr4 (39-147)||(12618681-12618788)
chr4 (23-74)||(14031282-14031333)
chr4 (105-151)||(23504749-23504795)
chr4 (42-96)||(24396249-24396303)
chr4 (20-129)||(31690412-31690520)
chr4 (100-148)||(23605974-23606022)
chr4 (15-75)||(33559098-33559158)
[»] chr5 (25 HSPs)
chr5 (15-147)||(18229564-18229696)
chr5 (20-147)||(30104816-30104943)
chr5 (11-147)||(30501097-30501234)
chr5 (11-147)||(30541440-30541577)
chr5 (46-147)||(9276573-9276674)
chr5 (43-135)||(16667282-16667374)
chr5 (17-148)||(3140825-3140956)
chr5 (11-149)||(8221132-8221270)
chr5 (41-135)||(7719228-7719322)
chr5 (20-151)||(17692270-17692400)
chr5 (17-148)||(41047997-41048128)
chr5 (11-148)||(112444-112581)
chr5 (43-147)||(15720079-15720183)
chr5 (20-135)||(8208203-8208318)
chr5 (44-130)||(2918587-2918675)
chr5 (15-135)||(34899099-34899218)
chr5 (38-89)||(7968460-7968511)
chr5 (66-145)||(40530448-40530527)
chr5 (18-148)||(5815036-5815166)
chr5 (20-118)||(13480060-13480159)
chr5 (20-75)||(31672495-31672550)
chr5 (50-145)||(39558764-39558859)
chr5 (11-76)||(5758644-5758709)
chr5 (47-148)||(23117221-23117321)
chr5 (14-75)||(29342401-29342462)
[»] chr8 (31 HSPs)
chr8 (14-149)||(27801187-27801322)
chr8 (11-150)||(4384094-4384232)
chr8 (20-147)||(42636333-42636460)
chr8 (13-147)||(28207636-28207770)
chr8 (11-151)||(1369818-1369957)
chr8 (20-147)||(33013057-33013183)
chr8 (41-145)||(3146050-3146158)
chr8 (44-146)||(1135174-1135276)
chr8 (11-135)||(2258049-2258173)
chr8 (66-135)||(167857-167926)
chr8 (37-148)||(33949534-33949645)
chr8 (66-145)||(2888729-2888812)
chr8 (49-135)||(35901955-35902041)
chr8 (11-147)||(12954740-12954876)
chr8 (20-147)||(37427200-37427329)
chr8 (6-137)||(45197399-45197530)
chr8 (40-118)||(36355944-36356022)
chr8 (15-135)||(12829835-12829953)
chr8 (76-135)||(5588984-5589043)
chr8 (76-147)||(17081394-17081465)
chr8 (15-98)||(26750611-26750694)
chr8 (11-149)||(9735263-9735400)
chr8 (49-135)||(12684490-12684576)
chr8 (49-146)||(24695760-24695856)
chr8 (12-76)||(3463501-3463565)
chr8 (67-135)||(3520822-3520890)
chr8 (77-147)||(37813426-37813497)
chr8 (43-89)||(884486-884532)
chr8 (105-151)||(12544988-12545034)
chr8 (15-68)||(16723169-16723222)
chr8 (66-130)||(33067531-33067595)
[»] chr1 (26 HSPs)
chr1 (16-147)||(47187785-47187915)
chr1 (15-129)||(2864172-2864285)
chr1 (14-147)||(38748683-38748815)
chr1 (14-130)||(43396976-43397092)
chr1 (20-147)||(45640559-45640685)
chr1 (44-151)||(39150590-39150697)
chr1 (20-120)||(34409773-34409872)
chr1 (15-147)||(44829284-44829415)
chr1 (10-135)||(44329620-44329745)
chr1 (13-147)||(14746160-14746294)
chr1 (14-151)||(34232672-34232805)
chr1 (71-151)||(8794424-8794504)
chr1 (44-135)||(31889186-31889278)
chr1 (44-147)||(39156273-39156380)
chr1 (42-147)||(7212785-7212885)
chr1 (66-130)||(604444-604508)
chr1 (18-149)||(17552843-17552972)
chr1 (71-147)||(38491233-38491309)
chr1 (40-129)||(4851232-4851321)
chr1 (42-135)||(44329488-44329581)
chr1 (55-135)||(40460725-40460805)
chr1 (20-147)||(2994940-2995065)
chr1 (47-133)||(36563730-36563814)
chr1 (15-147)||(3982277-3982408)
chr1 (66-151)||(8365511-8365596)
chr1 (79-151)||(26811258-26811330)
[»] chr2 (18 HSPs)
chr2 (44-147)||(9448945-9449047)
chr2 (41-151)||(19890177-19890287)
chr2 (5-147)||(41933143-41933285)
chr2 (16-135)||(1334847-1334966)
chr2 (20-144)||(31452314-31452437)
chr2 (16-147)||(31017271-31017402)
chr2 (44-151)||(19514879-19514986)
chr2 (17-183)||(34904752-34904928)
chr2 (16-135)||(15505568-15505687)
chr2 (44-147)||(4762361-4762464)
chr2 (39-130)||(29239235-29239326)
chr2 (67-151)||(7673202-7673286)
chr2 (43-149)||(9173696-9173803)
chr2 (49-151)||(20064919-20065020)
chr2 (48-147)||(38533864-38533962)
chr2 (47-149)||(37993088-37993190)
chr2 (14-54)||(41551385-41551425)
chr2 (95-147)||(43228867-43228919)
[»] chr3 (15 HSPs)
chr3 (40-149)||(51351287-51351396)
chr3 (20-151)||(29083866-29083998)
chr3 (14-146)||(48180132-48180264)
chr3 (20-151)||(42845977-42846104)
chr3 (11-147)||(12086721-12086857)
chr3 (50-135)||(40673458-40673543)
chr3 (44-135)||(26900014-26900106)
chr3 (11-147)||(39551814-39551949)
chr3 (76-135)||(22730509-22730568)
chr3 (67-129)||(24791526-24791588)
chr3 (44-135)||(41309842-41309936)
chr3 (15-74)||(8957697-8957755)
chr3 (43-89)||(26143168-26143214)
chr3 (66-135)||(42939856-42939925)
chr3 (67-135)||(49362368-49362436)
[»] chr6 (19 HSPs)
chr6 (14-134)||(30801766-30801886)
chr6 (17-147)||(17215647-17215777)
chr6 (39-135)||(31855078-31855174)
chr6 (21-133)||(9762828-9762939)
chr6 (15-135)||(32823701-32823821)
chr6 (58-148)||(1840994-1841084)
chr6 (14-147)||(7421684-7421817)
chr6 (43-148)||(23399121-23399226)
chr6 (19-148)||(28874410-28874539)
chr6 (11-151)||(27778762-27778900)
chr6 (53-135)||(3766301-3766383)
chr6 (46-151)||(19293446-19293551)
chr6 (14-149)||(5446625-5446758)
chr6 (20-147)||(2864890-2865016)
chr6 (44-149)||(30739609-30739714)
chr6 (44-147)||(1479084-1479186)
chr6 (100-147)||(2692477-2692524)
chr6 (100-151)||(11720925-11720976)
chr6 (66-135)||(26669292-26669361)
[»] scaffold0036 (1 HSPs)
scaffold0036 (20-145)||(62492-62617)
[»] scaffold0268 (1 HSPs)
scaffold0268 (42-135)||(20238-20330)
[»] scaffold0419 (1 HSPs)
scaffold0419 (19-148)||(1076-1205)
[»] scaffold1444 (2 HSPs)
scaffold1444 (72-135)||(1723-1786)
scaffold1444 (71-151)||(950-1030)
[»] scaffold0119 (1 HSPs)
scaffold0119 (66-135)||(1432-1501)
[»] scaffold0003 (1 HSPs)
scaffold0003 (44-145)||(103640-103741)
[»] scaffold0004 (1 HSPs)
scaffold0004 (71-147)||(335866-335942)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 7653734 - 7653416
Alignment:
Q  1 agaattaatgttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  7653734 agaattaatgttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaagtaagtttttaatgaaaagttgtgtaatgaatgaa 7653635  T
Q  101 ttggaaattataatagttgactttttaaaagaatagttgctaaatttaggagtgccccgagagcactcgttaacaagacccatgttttaattggatacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7653634 ttggaaattataatagttgactttttaaaagaatagttgctaaatttaggagtgccccgggagcactcgttaacaagacccatgttttaattggatacat 7653535  T
Q  201 ttctattgatgttttaaaaatatttaggccaaaaatataaatgcatgctaagctccttacttttaaaaatgttacacttctacacaaacaatgttatgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653534 ttctattgatgttttaaaaatatttaggccaaaaatataaatgcatgctaagctccttacttttaaaaatgttacacttctacacaaacaatgttatgaa 7653435  T
Q  301 caatgaaatttgcgcacag 319  Q
    |||||||||||||||||||    
T  7653434 caatgaaatttgcgcacag 7653416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 35496540 - 35496667
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| | |||||| |||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||| |||| ||||| |||||||||    
T  35496540 aaatgttaacgagtgcccccggggcactctttaaacactttaaatggtaagtttttaatgaaaaattgtgtaatgaatgcattgaaaattgtaatagttg 35496639  T
Q  120 actttttaaaagaatagttgctaaattt 147  Q
    |||||||||||  |||||| ||||||||    
T  35496640 actttttaaaaatatagttactaaattt 35496667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 27123412 - 27123286
Alignment:
Q  21 aatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttga 120  Q
    ||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||| ||||||||||| | | |||| |||||||||| ||||||||||    
T  27123412 aatgttaacgagtgcccccggggcactctttaagcactttaaatggtaagtttttaacgaaaagttgtgtacttaatgcattggaaattgtaatagttga 27123313  T
Q  121 ctttttaaaagaatagttgctaaattt 147  Q
    ||||||||||||||  || ||||||||    
T  27123312 ctttttaaaagaatgattactaaattt 27123286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 28770621 - 28770501
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||| |||||||||||||| |  |||| |||||||||||||||| ||||  |||||||||||||||||||||||| | |||||| |||||||||| ||||    
T  28770621 aagggaaatgttaacgagtgcctccggaacactctttaagcactctaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaat 28770522  T
Q  115 agttgactttttaaaagaata 135  Q
    ||||||||||| |||||||||    
T  28770521 agttgacttttcaaaagaata 28770501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 44537487 - 44537355
Alignment:
Q  13 ttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 112  Q
    |||||| |||||||||||||| | |||||| ||||||||||||||||||||  ||||||||||||||||||||| || | |  ||  | |||||||||||    
T  44537487 ttaagggaaatgttaacgagtgcccccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttatgtattatatacaatggaaattata 44537388  T
Q  113 atagttgactttttaaaagaatagttgctaaat 145  Q
    ||||||||||||||||||||||| || ||||||    
T  44537387 atagttgactttttaaaagaataattactaaat 44537355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 35731430 - 35731299
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||| |||||||||||||| | |||||| |||||||||||||||||||   ||||||| || || |||||||||| | | | || |||||||||| ||||    
T  35731430 aagggaaatgttaacgagtgcccccggg-cactctttaagcactttaattagtaagttctttataaaaagttgtgtattaagtgcattggaaattgtaat 35731332  T
Q  115 agttgactttttaaaagaatagttgctaaattt 147  Q
    ||||||||||||||||||||||||| |||||||    
T  35731331 agttgactttttaaaagaatagttgttaaattt 35731299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 28663106 - 28663221
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||| | |  ||||| ||||||||||||||||||||  ||||| |||||||||||| ||||| | |||||| |||| ||||| |||||||||    
T  28663106 aaatgttaacgaatgcctccggggcactctttaagcactttaaatagtaaggttttaatgaaaaattgtgtattgaatgcattgaaaattgtaatagttg 28663205  T
Q  120 actttttaaaagaata 135  Q
    ||||||||||||||||    
T  28663206 actttttaaaagaata 28663221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 21727367 - 21727499
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 113  Q
    ||||| |||||||||||||| |    ||| |||||||||||||||| ||| | |||||||||||| || | ||||| | |||||| |||||||||| |||    
T  21727367 taagggaaatgttaacgagtgcctttggggcactctttaagcacttcaaatgataagtttttaataaatatttgtgtattgaatgtattggaaattgtaa 21727466  T
Q  114 tagttgactttttaaaagaatagttgctaaatt 146  Q
    |||||||||||||||||||||| || |||||||    
T  21727467 tagttgactttttaaaagaataattactaaatt 21727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 43234928 - 43234798
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| | | |||| ||||||||||||||||||||  |||| |||||||||||||||| || | |||||| | |||||||| ||||||||     
T  43234928 aaatgttaacgagtgccctcggg-cactctttaagcactttaaatagtaaatttttaatgaaaagttatgtattgaatgtaatggaaattgtaatagttt 43234830  T
Q  120 actttttaaaagaatagttgctaaatttagga 151  Q
    | |||||||||||||| || |||||| |||||    
T  43234829 attttttaaaagaataattactaaatatagga 43234798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 39320971 - 39321076
Alignment:
Q  42 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgct 141  Q
    |||||||||||||||||||||   |||||||||| || |||||||||| | |||||  |||| ||||| ||||||||||||||||||||||||| ||| |    
T  39320971 gacactctttaagcactttaattagtaagttttttattaaaagttgtgtattgaatacattgaaaattgtaatagttgactttttaaaagaataattgtt 39321070  T
Q  142 aaattt 147  Q
    ||||||    
T  39321071 aaattt 39321076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 25886288 - 25886181
Alignment:
Q  41 ggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgc 140  Q
    ||||||||||||| ||||||||| ||||||||||  ||||||||||||| | | |||| |||| ||||| |||||||||||||| ||| |||||| || |    
T  25886288 ggacactctttaaacactttaaatggtaagttttatatgaaaagttgtgtattaaatgtattgaaaattgtaatagttgactttctaagagaataatttc 25886189  T
Q  141 taaattta 148  Q
    ||||||||    
T  25886188 taaattta 25886181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 14651357 - 14651459
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| | | |||| |||||||||||||||| |||  ||| |||||||||||||||||||| ||||| || |||||||||| ||| |||||    
T  14651357 aaatgttaacgagtgccctcggggcactctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtaatgattgcattggaaattgtaacagttg 14651456  T
Q  120 act 122  Q
    |||    
T  14651457 act 14651459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 3693017 - 3692889
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttta-atgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    ||||||||||||||  | ||||| ||||||||||| | |||||   ||||||||||  ||||||| ||||| | ||| || |||||||||| ||||||||    
T  3693017 aaatgttaacgagtgtttccggggcactctttaagtattttaattagtaagtttttttatgaaaaattgtgtattgagtgcattggaaattgtaatagtt 3692918  T
Q  119 gactttttaaaagaatagttgctaaattt 147  Q
    || |||||||||||||| |||||||||||    
T  3692917 gattttttaaaagaataattgctaaattt 3692889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 43224072 - 43224169
Alignment:
Q  38 ccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    ||||| || |||||||||||||||||  | |||||||||||||||||||||| | |  ||  |||||||||| ||| |||||||||||||||||||||    
T  43224072 ccggggcattctttaagcactttaaatagcaagtttttaatgaaaagttgtgtattacatacattggaaattgtaacagttgactttttaaaagaata 43224169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 26239533 - 26239637
Alignment:
Q  45 actctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaa 144  Q
    ||||||||| |||||||||  |||||||||||||||||| ||||  | | |||| |||||||| |||||  ||| ||||||| |||||||| ||||||||    
T  26239533 actctttaaacactttaaatagtaagtttttaatgaaaaattgtatattcaatgcattggaaactataaacgttaactttttgaaagaataattgctaaa 26239632  T
Q  145 tttag 149  Q
    |||||    
T  26239633 tttag 26239637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 34117859 - 34117953
Alignment:
Q  41 ggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||||||||||| |||||| | |||||||||||| |||| ||||  ||| || | |||||||||  |||||||||||||| ||||| ||||    
T  34117859 ggacactctttaagcattttaaatgataagtttttaataaaaaattgtataattaacgcattggaaatcgtaatagttgactttctaaaataata 34117953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 9718983 - 9719059
Alignment:
Q  42 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    |||||||||||||||||||||| ||||||||||  |||||||||| || |||||||  |||| ||||| ||| ||||    
T  9718983 gacactctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgtaacagtt 9719059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 35923474 - 35923585
Alignment:
Q  20 aaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    |||||||||||||| ||||| || ||||||||||| |||||||||   |||||||||| |||||||||    | |||||| |||||||||| ||||||||    
T  35923474 aaatgttaacgagtgtctcc-ggaacactctttaaacactttaaataataagtttttattgaaaagtt----attgaatgcattggaaattgtaatagtt 35923568  T
Q  119 gactttttaaaagaata 135  Q
     | |||| |||||||||    
T  35923569 tatttttaaaaagaata 35923585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 8920665 - 8920759
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 109  Q
    |||| ||||||||||||||   || ||| |||||||||||  ||||||||||||| |||||  ||||||||| || ||| |||| ||||||||||    
T  8920665 aagggaaatgttaacgagtggccctggggcactctttaagacctttaaaaggtaatttttttttgaaaagttatgtaatcaatgcattggaaatt 8920759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 10200685 - 10200593
Alignment:
Q  42 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||||||||||||||||| | ||||||||| ||  |||||| || | | |||| ||| |||||| |||  ||||||||||||||||||||    
T  10200685 gacactctttaagcactttaaatgataagttttt-atagaaagttatgtatttaatgcatttgaaattgtaacggttgactttttaaaagaata 10200593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 27337790 - 27337709
Alignment:
Q  66 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    |||||||||| ||||||||||||| | | |||| |||| ||| | |||||||||| ||||| |||||||| ||| |||||||    
T  27337790 gtaagttttttatgaaaagttgtgtatttaatgtattgtaaactgtaatagttgatttttttaaagaataattgttaaattt 27337709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 40753938 - 40754041
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    |||||||||| || |||||| | ||||||||||||||||||||||| | | |||| ||| |||| | |||||||||| ||||| ||| |||| ||  |||    
T  40753938 cactctttaaacattttaaatgataagtttttaatgaaaagttgtgtattaaatgtatt-gaaaatgtaatagttgatttttttaaaaaataattattaa 40754036  T
Q  144 attta 148  Q
    |||||    
T  40754037 attta 40754041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 48488172 - 48488211
Alignment:
Q  47 tctttaagcactttaaaaggtaagtttttaatgaaaagtt 86  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  48488172 tctttaagcactttaaatgataagtttttaatgaaaagtt 48488211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 18801122 - 18801052
Alignment:
Q  77 atgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    ||||||||||||| | | | || |||| ||||| ||||||||||||||| |||||| || |||||||||||    
T  18801122 atgaaaagttgtgtattcattgtattgaaaattgtaatagttgacttttgaaaagagtaattgctaaattt 18801052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 7968617 - 7968654
Alignment:
Q  111 taatagttgactttttaaaagaatagttgctaaattta 148  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  7968617 taatagttgattttttaaaagaataattgctaaattta 7968654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 29711463 - 29711588
Alignment:
Q  23 tgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgact 122  Q
    ||||||||||| || ||||  |||| ||||| ||||| ||| | ||| ||||  || |||| || || |||||||  |||| |||||||||| ||||| |    
T  29711463 tgttaacgagtgcttccggatcactatttaaacacttaaaatgataaattttatataaaaaattatgtaatgaatacattgaaaattataattgttgatt 29711562  T
Q  123 ttttaaaagaatagttgctaaattta 148  Q
    ||||||||||| | || |||||||||    
T  29711563 ttttaaaagaaaaatttctaaattta 29711588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 17157731 - 17157791
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttt 75  Q
    |||| |||||||||||||| | |||| | |||||||||||  ||||||||||||| |||||    
T  17157731 aagggaaatgttaacgagtgcccccgaggcactctttaagacctttaaaaggtaacttttt 17157791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 51835053 - 51834922
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    ||||||||||||||  ||||| |||||||||||| |||||||||  |||| ||||||||||||||||||| | | |||| ||||||||||||||||||||    
T  51835053 aaatgttaacgagtgttcccgagacactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtatttaatgcattggaaattataatagttg 51834954  T
Q  120 actttttaaaagaatagttgctaaatttagga 151  Q
    |||||||||||||||| |||||||||||||||    
T  51834953 actttttaaaagaataattgctaaatttagga 51834922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 37138129 - 37138256
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| || ||||||||||||||||||| |||||   | ||||| || ||||||||||||| | ||| || ||||||||||||||||||||    
T  37138129 aaatgttaacgagtgcttccgggacactctttaagcaatttaattagaaagttctttatgaaaagttgtgtattgagtgcattggaaattataatagttg 37138228  T
Q  120 actttttaaaagaatagttgctaaattt 147  Q
    ||||||||||||||||||||||||||||    
T  37138229 actttttaaaagaatagttgctaaattt 37138256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 35777693 - 35777793
Alignment:
Q  47 tctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatt 146  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||| |||||| |||||||| |||||||||||||||| || |||||||    
T  35777693 tctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattgaatgcattagaaattgtaatagttaactttttaaaagaataattactaaatt 35777792  T
Q  147 t 147  Q
    |    
T  35777793 t 35777793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 45900111 - 45900247
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||| |||||||||||||| | || ||| |||||||||||||||||||   ||||||||   ||||||||||||| | |||||| |||||||||| | ||    
T  45900111 aagggaaatgttaacgagtgccccgggggcactctttaagcactttaattagtaagtttcatatgaaaagttgtgtattgaatgcattggaaattgtgat 45900210  T
Q  115 agttgactttttaaaagaatagttgctaaatttagga 151  Q
    |||||||||| |||||||||| |||||||||||||||    
T  45900211 agttgactttataaaagaataattgctaaatttagga 45900247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 7852511 - 7852642
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||| ||||||||| |  ||||| ||||||||||||||||||||  |||||||||||||||||||||||| | | |||| |||| ||||| ||||||||     
T  7852511 aaatattaacgagtgccaccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattgtaatagtta 7852610  T
Q  120 actttttaaaagaatagttgctaaatttagga 151  Q
    | |||||||||||||| || ||||||||||||    
T  7852611 attttttaaaagaataattactaaatttagga 7852642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 50427135 - 50427001
Alignment:
Q  13 ttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 112  Q
    ||||||||||||||||||||| | || | | |||||||||| |||||||||  |||| |||||||||||||||||||   ||| || |||||||||| ||    
T  50427135 ttaaggaaaatgttaacgagtgcccctgtggcactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtgttgattgcattggaaattgta 50427036  T
Q  113 atagttgactttttaaaagaatagttgctaaattt 147  Q
    ||||||||||||| ||||||||| || ||||||||    
T  50427035 atagttgacttttcaaaagaataattactaaattt 50427001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 7444352 - 7444480
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| |||||| |||||||||||| |||||||||   ||||||||||| ||||||||||| | |||||| |||| ||||| |||||||||    
T  7444352 aaatgttaacgagtgctcccgagacactctttaaacactttaaatactaagtttttaaagaaaagttgtgtattgaatgcattgaaaattgtaatagttg 7444451  T
Q  120 ac-tttttaaaagaatagttgctaaattt 147  Q
    || |||||||||| ||| || ||||||||    
T  7444452 acttttttaaaagtataattactaaattt 7444480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 8297992 - 8297883
Alignment:
Q  38 ccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagt 137  Q
    ||||| || |||||||||||||||||  |||||||||||||||||| ||||| | |||||| |||||||||| ||| ||||||| ||||||||||||| |    
T  8297992 ccggggcaatctttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgcattggaaattgtaacagttgacattttaaaagaataat 8297893  T
Q  138 tgctaaattt 147  Q
    | ||||||||    
T  8297892 tactaaattt 8297883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 36702919 - 36702814
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    ||||||||||||||||  |||||||||||||||||||||||||    ||||||||||||||||| ||||| | |||||| |||| ||||| ||||| |||    
T  36702919 aaatgttaacgagttcctccgggacactctttaagcactttaa----taagtttttaatgaaaaattgtgtattgaatgcattgaaaattgtaataattg 36702824  T
Q  120 actttttaaa 129  Q
    ||||||||||    
T  36702823 actttttaaa 36702814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 47995697 - 47995833
Alignment:
Q  13 ttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 112  Q
    ||||||||||||||||| |||   || | ||| ||||||||||||||||||  ||||||||||||||||||||| || | |||||| |||| ||||| ||    
T  47995697 ttaaggaaaatgttaacaagtgtccctgagactctctttaagcactttaaattgtaagtttttaatgaaaagttatgtattgaatgcattgaaaattgta 47995796  T
Q  113 atagttgactttttaaaagaatagttgctaaatttag 149  Q
    ||| || ||||||||||||| || || ||||||||||    
T  47995797 ataattaactttttaaaagagtaattactaaatttag 47995833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 50341859 - 50341961
Alignment:
Q  45 actctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaa 144  Q
    ||||||||||||||||| |  |||| |||| |||||||||||||| | ||||||  ||||||||| ||||||||||||||||||||||||| || |||||    
T  50341859 actctttaagcactttatatagtaaattttaaatgaaaagttgtgtattgaatgcgttggaaattgtaatagttgactttttaaaagaataattactaaa 50341958  T
Q  145 ttt 147  Q
    |||    
T  50341959 ttt 50341961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 31429416 - 31429301
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||| ||||| || ||  |||| | ||||||||||||||   ||||||||| |||||||||||||| | |||||| |||||||||| |||||||||    
T  31429416 aaatgttatcgagtgcttccatgacattttttaagcactttaattagtaagttttaaatgaaaagttgtgtattgaatgcattggaaattgtaatagttg 31429317  T
Q  120 actttttaaaagaata 135  Q
    | ||||||||||||||    
T  31429316 attttttaaaagaata 31429301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 24229610 - 24229740
Alignment:
Q  17 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 116  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||    |||||||||||||||| ||||| | | |||| |||| ||||| | |||     
T  24229610 ggaaaatgttaacgggtgctcccgagacactctttaagcactttaaataaaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgataa 24229709  T
Q  117 ttgactttttaaaagaatagttgctaaattt 147  Q
    || |||||| ||||||||| || ||||||||    
T  24229710 tttacttttaaaaagaataattactaaattt 24229740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 37440974 - 37440836
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 110  Q
    |||||||| |||||||||||||| | |  | ||||||||||||| |||||||| ||||| ||| ||||||||| || || | ||||   |||| |||||     
T  37440974 ttttaagggaaatgttaacgagtgcccttgagacactctttaagtactttaaatggtaaatttataatgaaaaattatgtattgaacacattgaaaattg 37440875  T
Q  111 taatagttgactttttaaaagaatagttgctaaatttag 149  Q
    |||||||||||||||||||| |||| || ||||||||||    
T  37440874 taatagttgactttttaaaataataattactaaatttag 37440836  T

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Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 53014158 - 53014304
Alignment:
Q  5 ttaatgttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattgg 104  Q
    ||||||| || | ||||||||||| |||| |   ||||| | || |||||||||||||| |||| ||||||||| |||||||||| | |||||| |||||    
T  53014158 ttaatgtctttaagaaaatgttaatgagtgccttcgggaaattcgttaagcactttaaatggtatgtttttaataaaaagttgtgtattgaatgtattgg 53014257  T
Q  105 aaattataatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    ||||| |||||||| | |||||||||  ||| || ||||||||||||    
T  53014258 aaattgtaatagttaattttttaaaaagataattactaaatttagga 53014304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 31174612 - 31174733
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 113  Q
    ||||| |||||||||||||| || | |||| | |||||||  |||||||| | ||| ||||||||||||||||||| |||||||  |||| ||||| |||    
T  31174612 taagggaaatgttaacgagtgcttctgggatattctttaaatactttaaatgataaatttttaatgaaaagttgtgtaatgaatatattgaaaattgtaa 31174711  T
Q  114 tagttgactttttaaaagaata 135  Q
     |||| ||||||||||||||||    
T  31174712 cagttaactttttaaaagaata 31174733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 49084412 - 49084499
Alignment:
Q  65 ggtaagtttttaatgaaaagttgtgcaatgaatga-attggaaattataatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    ||||||||||||||||||||||||| | |||||   |||| ||||| ||||||||||||||||||||||||| || ||||||||||||    
T  49084412 ggtaagtttttaatgaaaagttgtgtattgaatttcattgaaaattgtaatagttgactttttaaaagaataattactaaatttagga 49084499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 34391671 - 34391801
Alignment:
Q  17 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 116  Q
    ||||||||||||||||| ||  || |  ||||||||| ||||| |||  ||||||||||||| |||||||||| | ||| || |||||||||| |||||     
T  34391671 ggaaaatgttaacgagtactttcgaggtactctttaaacacttaaaatagtaagtttttaataaaaagttgtgtattgattgcattggaaattgtaataa 34391770  T
Q  117 ttgactttttaaaagaatagttgctaaattt 147  Q
     ||||||| |||||||||| || ||||||||    
T  34391771 ctgactttataaaagaataattactaaattt 34391801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 41462164 - 41462063
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    ||||||||||||| ||||||  |||||||||||||||||| || || | | |||| ||  |||||| ||||||||||||||||||||||||| || ||||    
T  41462164 cactctttaagcattttaaatagtaagtttttaatgaaaaattatgtattaaatgcataagaaattgtaatagttgactttttaaaagaataattactaa 41462065  T
Q  144 at 145  Q
    ||    
T  41462064 at 41462063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 24175385 - 24175496
Alignment:
Q  39 cgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagtt 138  Q
    |||| |||||||||||||||||||| ||||||||||  | ||||||||||| | | |||| |||  ||||| |||||||| || ||||||||||||| ||    
T  24175385 cggggcactctttaagcactttaaatggtaagttttgtacgaaaagttgtgtattaaatgcatttaaaattgtaatagtttac-ttttaaaagaatattt 24175483  T
Q  139 gctaaatttagga 151  Q
     ||||||||||||    
T  24175484 actaaatttagga 24175496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 51736433 - 51736366
Alignment:
Q  80 aaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    |||||||||| | | |||| |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  51736433 aaaagttgtgtattcaatgtattgaaaattataatagttgactttttaaaagaataattgctaaattt 51736366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 23605634 - 23605703
Alignment:
Q  20 aaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtg 89  Q
    |||||||||||||| ||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||    
T  23605634 aaatgttaacgagtgtctcc-gggatactttttaagcactttaaatggtaagtttttaatgaaaagttgtg 23605703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 42223069 - 42222967
Alignment:
Q  45 actctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaa 144  Q
    |||||||||| |||| ||  |||||||||||||| |||| ||||| | |||||| |||| |||||||||||||||  ||||||||  ||||||| |||||    
T  42223069 actctttaagtacttaaagtggtaagtttttaataaaaaattgtgtattgaatgcattgaaaattataatagttggttttttaaataaatagttactaaa 42222970  T
Q  145 ttt 147  Q
    |||    
T  42222969 ttt 42222967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 49400726 - 49400620
Alignment:
Q  45 actctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaa 144  Q
    |||||||||||||||||||    ||  |||||||||||||| ||| | | |||  |||||||||| |||||||||| |||||||||||||| || |||||    
T  49400726 actctttaagcactttaaataacaaaattttaatgaaaagtcgtgtattaaatacattggaaattgtaatagttgattttttaaaagaataattactaaa 49400627  T
Q  145 tttagga 151  Q
    |||||||    
T  49400626 tttagga 49400620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 8261247 - 8261139
Alignment:
Q  20 aaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    |||||||||||||| ||||  ||| ||||||| ||||||||||||  ||||||||||||||||||||| || | | |||| |||| ||||| ||| ||||    
T  8261247 aaatgttaacgagtgtctctgggg-cactcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagtt 8261149  T
Q  119 gactttttaa 128  Q
    ||||||||||    
T  8261148 gactttttaa 8261139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 8274664 - 8274556
Alignment:
Q  20 aaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    |||||||||||||| ||||  ||| ||||||| ||||||||||||  ||||||||||||||||||||| || | | |||| |||| ||||| ||| ||||    
T  8274664 aaatgttaacgagtgtctctgggg-cactcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagtt 8274566  T
Q  119 gactttttaa 128  Q
    ||||||||||    
T  8274565 gactttttaa 8274556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 27953046 - 27953123
Alignment:
Q  58 tttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||| ||||||||||||| ||||||||||| | |||||| |||| ||||| |||||||| ||||||||||| ||||    
T  27953046 tttaaatggtaagtttttaacgaaaagttgtgtattgaatgcattgaaaattgtaatagttaactttttaaaataata 27953123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 20394750 - 20394650
Alignment:
Q  45 actctttaagcactttaaaaggtaagtttttaatgaaaa-gttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    ||||||||| || |||||| || |||||||||||||||| |||||  | |||||| |||||||||| |||||||| |||||||||||||||| || ||||    
T  20394750 actctttaaacattttaaatgg-aagtttttaatgaaaatgttgt--attgaatgtattggaaattgtaatagttcactttttaaaagaataattactaa 20394654  T
Q  144 attt 147  Q
    ||||    
T  20394653 attt 20394650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 13585250 - 13585326
Alignment:
Q  42 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    |||||||||||||||||||||| ||||||||||  |||||||||| || |||||||  |||| ||||| ||| ||||    
T  13585250 gacactctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgtaacagtt 13585326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 7628102 - 7628009
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 109  Q
    |||| |||||||||||||| | |||||| |||||||||||  ||||||||||||| |||||  ||||||||| || ||  |||| ||||||||||    
T  7628102 aagggaaatgttaacgagtgcccccggggcactctttaagacctttaaaaggtaacttttt-ttgaaaagttatgtaaccaatgtattggaaatt 7628009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 25115260 - 25115357
Alignment:
Q  49 tttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    ||||| |||||||||  ||||||||||| | |||||||||| | | | || |||||||||| |||||||| ||||||||||| |||| || ||||||||    
T  25115260 tttaaacactttaaatagtaagttttta-taaaaagttgtgtattcactgcattggaaattgtaatagttaactttttaaaataataattactaaattt 25115357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 37060667 - 37060625
Alignment:
Q  41 ggacactctttaagcactttaaaaggtaagtttttaatgaaaa 83  Q
    ||||||| ||||||||||||||| |||||||||||||||||||    
T  37060667 ggacactttttaagcactttaaatggtaagtttttaatgaaaa 37060625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 12618681 - 12618788
Alignment:
Q  39 cgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagtt 138  Q
    |||| |||||||||| ||| || |||| |||||||||| |||||| ||||  ||| |||| |||| || |||||| | |||||||||||||| |||| ||    
T  12618681 cggggcactctttaaacacctttaaagttaagttttta-tgaaaatttgtataatcaatgcattgaaatttataacatttgactttttaaaaaaataatt 12618779  T
Q  139 gctaaattt 147  Q
     ||||||||    
T  12618780 tctaaattt 12618788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 14031282 - 14031333
Alignment:
Q  23 tgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttt 74  Q
    ||||||||||| | |||||  |||||||||||||||||||| ||||||||||    
T  14031282 tgttaacgagtgcacccggtgcactctttaagcactttaaacggtaagtttt 14031333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 23504795 - 23504749
Alignment:
Q  105 aaattataatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    ||||| |||||||||| |||||||||||||| || ||||||||||||    
T  23504795 aaattttaatagttgattttttaaaagaataatttctaaatttagga 23504749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 24396303 - 24396249
Alignment:
Q  42 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaa 96  Q
    ||||||||||||| |||||||| ||||||||||  |||||||||| || ||||||    
T  24396303 gacactctttaagtactttaaatggtaagttttatatgaaaagttatgtaatgaa 24396249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 31690520 - 31690412
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| | | ||| |||||| |||| |||||||||  |||| ||| | ||||||||||||| | | |||| |||| |||||  || |||||    
T  31690520 aaatgttaacgagtgccctcgg-acactccttaaacactttaaatagtaaatttcttatgaaaagttgtgtattcaatgcattgaaaattgcaacagttg 31690422  T
Q  120 actttttaaa 129  Q
    ||||||||||    
T  31690421 actttttaaa 31690412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 23605974 - 23606022
Alignment:
Q  100 attggaaattataatagttgactttttaaaagaatagttgctaaattta 148  Q
    |||||||||| ||||| || |||||||||||||||| || |||||||||    
T  23605974 attggaaattgtaataattaactttttaaaagaataattactaaattta 23606022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 33559098 - 33559158
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttt 75  Q
    ||||||||||||||||||| |||  || |||||||||||   ||||||||||||| |||||    
T  33559098 aaggaaaatgttaacgagtgctcttggaacactctttaaaacctttaaaaggtaatttttt 33559158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 18229564 - 18229696
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||  | |||||| |||||||||| ||||    
T  18229564 aagggaaatgttaacgagtgcttccgggacactctttaagcactttaaatggtaagtttttaatgaaaaattgtttattgaatgtattggaaattgtaat 18229663  T
Q  115 agttgactttttaaaagaatagttgctaaattt 147  Q
    |||| |||||||||||||||| || ||||||||    
T  18229664 agttaactttttaaaagaataattactaaattt 18229696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 30104943 - 30104816
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||| ||| | |||||  |||||||||| ||||||||  ||||||||||||||||||||||||| | |||||| |||||||||| |||| ||||    
T  30104943 aaatgttaactagtgcccccggagcactctttaaacactttaagtggtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaattgttg 30104844  T
Q  120 actttttaaaagaatagttgctaaattt 147  Q
    ||||||||||| ||||||| ||||||||    
T  30104843 actttttaaaaaaatagttactaaattt 30104816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 30501097 - 30501234
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctccc-gggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 109  Q
    ||||| || |||||||||||||| | ||| ||| ||||  ||||||||||||||  ||||||||| |||||||||||||| | |||||| ||||||||||    
T  30501097 ttttatgggaaatgttaacgagtgccccccggggcacttgttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaatt 30501196  T
Q  110 ataatagttgactttttaaaagaatagttgctaaattt 147  Q
     ||||| ||||||||||||||||||| || ||||||||    
T  30501197 gtaataattgactttttaaaagaataattactaaattt 30501234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 30541440 - 30541577
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctccc-gggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 109  Q
    ||||| || |||||||||||||| | ||| ||| ||||  ||||||||||||||  ||||||||| |||||||||||||| | |||||| ||||||||||    
T  30541440 ttttatgggaaatgttaacgagtgccccccggggcacttgttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaatt 30541539  T
Q  110 ataatagttgactttttaaaagaatagttgctaaattt 147  Q
     ||||| ||||||||||||||||||| || ||||||||    
T  30541540 gtaataattgactttttaaaagaataattactaaattt 30541577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 9276573 - 9276674
Alignment:
Q  46 ctctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaat 145  Q
    ||||||||||||||||||  ||||||||||||||||||||| || | |||||| |||| |||||||||||||||| ||||||||| |||| || ||||||    
T  9276573 ctctttaagcactttaaatagtaagtttttaatgaaaagttatgtattgaatgcattgaaaattataatagttgattttttaaaaaaataattactaaat 9276672  T
Q  146 tt 147  Q
    ||    
T  9276673 tt 9276674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 16667282 - 16667374
Alignment:
Q  43 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    ||||| |||||||||||||||  |||||||||||||||||| ||||| | |||||| |||||||||| ||||| |||||||||||||||||||    
T  16667282 acactttttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgtattggaaattgtaataattgactttttaaaagaata 16667374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 3140956 - 3140825
Alignment:
Q  17 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 116  Q
    |||||||||||| ||||  ||||||||||| |||||| |||||||||   |||||||| ||| |||||||||  | | ||||||||| ||||| ||||||    
T  3140956 ggaaaatgttaatgagtgttcccgggacacactttaaacactttaaataataagttttaaataaaaagttgtatattaaatgaattgaaaattgtaatag 3140857  T
Q  117 ttgactttttaaaagaatagttgctaaattta 148  Q
    ||||||||||||||||||| ||  ||||||||    
T  3140856 ttgactttttaaaagaataattattaaattta 3140825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 8221270 - 8221132
Alignment:
Q  11 ttttaaggaaaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 109  Q
    |||||||||||||||||| |||| ||||| | | || |||||||||| ||||||  ||||||||||||| |||| ||||| | |||||| |||| || ||    
T  8221270 ttttaaggaaaatgttaatgagtgtctccggag-cattctttaagcattttaaatagtaagtttttaataaaaaattgtgtattgaatgcattgaaagtt 8221172  T
Q  110 ataatagttgactttttaaaagaatagttgctaaatttag 149  Q
     |||||||||||||||||| |||||| |||||||||||||    
T  8221171 gtaatagttgactttttaagagaataattgctaaatttag 8221132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 7719322 - 7719228
Alignment:
Q  41 ggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    ||||||| |||||||||||||||   ||||||||||||||||||||||| | |||||  |||||||||| |||||||||| ||||||||||||||    
T  7719322 ggacactttttaagcactttaaataataagtttttaatgaaaagttgtgtattgaatatattggaaattgtaatagttgattttttaaaagaata 7719228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 17692400 - 17692270
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| | ||||||  ||||||||||||||| |||  ||| |||||||||||||||||||| | | | || |||| ||||| ||| |||||    
T  17692400 aaatgttaacgagtgcccccgggt-actctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtagtaattgcattgaaaattgtaacagttg 17692302  T
Q  120 actttttaaaagaatagttgctaaatttagga 151  Q
    ||||||||| |||||| || ||||||||||||    
T  17692301 actttttaagagaataattactaaatttagga 17692270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 41048128 - 41047997
Alignment:
Q  17 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 116  Q
    |||||||||||||| || |  || ||| |||||||||| |||| ||| ||  |||||||||||||||  |||||| | |||| ||||||||||||||||     
T  41048128 ggaaaatgttaacgggtgcctccaggatactctttaagtacttaaaatgggtagtttttaatgaaaaagtgtgcatttaatgcattggaaattataataa 41048029  T
Q  117 ttgactttttaaaagaatagttgctaaattta 148  Q
    || || |||||||| |||| ||||||||||||    
T  41048028 ttaaccttttaaaaaaataattgctaaattta 41047997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 112444 - 112581
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 110  Q
    ||||||||||| ||||||||||| | || ||||||||||||||||||||||||    || ||||||||||||| ||||| | | |||  |||| |||||     
T  112444 ttttaaggaaactgttaacgagtgccccggggacactctttaagcactttaaataacaaatttttaatgaaaaattgtgtattaaatacattgaaaattg 112543  T
Q  111 taatagttgactttttaaaagaatagttgctaaattta 148  Q
    ||  ||||||||||| ||||||||| || |||| ||||    
T  112544 tatcagttgacttttcaaaagaataattactaatttta 112581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 15720183 - 15720079
Alignment:
Q  43 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgcta 142  Q
    ||||||||||| ||||||||   ||||||| || ||||||||||||| | | | |  |||||||||| ||||||||||||||||||||||||| ||| ||    
T  15720183 acactctttaaacactttaattagtaagttctttatgaaaagttgtgtattaagttcattggaaattgtaatagttgactttttaaaagaataattgata 15720084  T
Q  143 aattt 147  Q
    |||||    
T  15720083 aattt 15720079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 8208318 - 8208203
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| || ||||   ||||||||| ||| ||||| | ||||||||  |||||||||| || |||||||| |||  ||||| ||||| |||    
T  8208318 aaatgttaacgagtgcttccggagtactctttaaacacattaaatgataagttttatatgaaaagttatgtaatgaatgcattaaaaattgtaataattg 8208219  T
Q  120 actttttaaaagaata 135  Q
    ||||||||||||||||    
T  8208218 actttttaaaagaata 8208203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 2918587 - 2918675
Alignment:
Q  44 cactctttaagcactttaaaaggtaag-tttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgac-tttttaaaa 130  Q
    ||||||||||||| ||||||  ||||  ||||||||||||||||||| | | |||| |||||||||||||||||||||| |||||||||    
T  2918587 cactctttaagcattttaaattgtaaaatttttaatgaaaagttgtgtattaaatgcattggaaattataatagttgacatttttaaaa 2918675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 34899099 - 34899218
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||| |||||||||||||| | || ||| |||||||||| |||||||||  ||||||||| ||||||||||| |  | | |||| ||| |||||| ||||    
T  34899099 aagggaaatgttaacgagtgcaccaggg-cactctttaaacactttaaatagtaagttttaaatgaaaagttatatattaaatgcattagaaattgtaat 34899197  T
Q  115 agttgactttttaaaagaata 135  Q
    | ||| |||||||||||||||    
T  34899198 aattgtctttttaaaagaata 34899218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 7968511 - 7968460
Alignment:
Q  38 ccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtg 89  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  7968511 ccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtg 7968460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 40530448 - 40530527
Alignment:
Q  66 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaat 145  Q
    |||||||||||||||| ||||||| | |||||||||| |||||| | |||||| ||||||||||| |||| || ||||||    
T  40530448 gtaagtttttaatgaatagttgtgtattgaatgaattagaaattgtgatagttaactttttaaaataataattactaaat 40530527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 5815036 - 5815166
Alignment:
Q  18 gaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagt 117  Q
    |||||||||||||||| ||   ||| |||||||||||||||| ||   ||||||||||||||||||| |||    |||||| |||||||||| |  ||||    
T  5815036 gaaaatgttaacgagtgcttttggggcactctttaagcacttaaagcagtaagtttttaatgaaaagatgtatgttgaatgtattggaaattgtggtagt 5815135  T
Q  118 tgactttttaaaagaatagttgctaaattta 148  Q
    | | |||||||| ||||| || |||||||||    
T  5815136 taaatttttaaatgaataattactaaattta 5815166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 13480159 - 13480060
Alignment:
Q  20 aaatgttaacgagttctcccgg-gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    |||||||||| |||| | |||| |||||||||||| |||||||||   ||| |||||||| |||  ||||| | |||||| |||| ||||||||||||||    
T  13480159 aaatgttaacaagtttttccggtgacactctttaaccactttaaataataaatttttaataaaatattgtgtattgaatgcattgaaaattataatagtt 13480060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 31672550 - 31672495
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttt 75  Q
    |||||||||||||| | |||||| |||||||||||  ||||||||||||| |||||    
T  31672550 aaatgttaacgagtgcccccggggcactctttaagacctttaaaaggtaacttttt 31672495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 39558764 - 39558859
Alignment:
Q  50 ttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaat 145  Q
    ||||||| ||||||  ||||||||||| |||||||| ||| |   |||| |||||||||| ||| |||||| |||||||| ||||| || ||||||    
T  39558764 ttaagcattttaaatagtaagtttttattgaaaagtcgtgtatcaaatgcattggaaattgtaacagttgaatttttaaatgaataattactaaat 39558859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 5758709 - 5758644
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttta 76  Q
    |||||||| ||||  |||||||| | |||||| |||| |||||| |||||||| ||||||||||||    
T  5758709 ttttaagggaaatactaacgagtgcccccggggcactttttaaggactttaaatggtaagttttta 5758644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 23117221 - 23117321
Alignment:
Q  47 tctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatt 146  Q
    ||||||| || ||||||  |||||||||||||||||| || || | | |||| |||||||||| |||| ||| || ||| |||||||||  |||||||||    
T  23117221 tctttaatcattttaaatagtaagtttttaatgaaaaattatgtattaaatgtattggaaattgtaattgttaac-tttaaaaagaataactgctaaatt 23117319  T
Q  147 ta 148  Q
    ||    
T  23117320 ta 23117321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 29342462 - 29342401
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttt 75  Q
    ||||| |||||||||||||| | |||||| |||| ||||||  ||||||||||||| |||||    
T  29342462 taagggaaatgttaacgagtgcccccggggcactttttaagacctttaaaaggtaacttttt 29342401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 27801187 - 27801322
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 113  Q
    ||||| |||||||||||||| |||  |||  |||||||||||||||||||  ||||||||||||| |||||||||| |||||||| |||| ||||| |||    
T  27801187 taagggaaatgttaacgagtgctcttggggtactctttaagcactttaaatagtaagtttttaataaaaagttgtgtaatgaatgcattgaaaattgtaa 27801286  T
Q  114 tagttgactttttaaaagaatagttgctaaatttag 149  Q
    |||||||||||||||||||||| || ||||||||||    
T  27801287 tagttgactttttaaaagaataattactaaatttag 27801322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 4384094 - 4384232
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 110  Q
    |||| ||| ||| ||||||||||  || ||||||||||||||||||||||||| | ||| |||||||||||| |||||| | |||||| ||||||||||     
T  4384094 tttttagggaaacgttaacgagtgttctcgggacactctttaagcactttaaatgataaatttttaatgaaa-gttgtgtattgaatgcattggaaattg 4384192  T
Q  111 taatagttgactttttaaaagaatagttgctaaatttagg 150  Q
    |||||||||| |||||||||||||| || |||||||||||    
T  4384193 taatagttgattttttaaaagaataattactaaatttagg 4384232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 42636333 - 42636460
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| |||||||  |||||||||||||||||||| ||||||||||||||||||||||||| | | |||| |||| ||||| |||||||||    
T  42636333 aaatgttaacgagtgctcccggagcactctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattaaatgcattgtaaattgtaatagttg 42636432  T
Q  120 actttttaaaagaatagttgctaaattt 147  Q
    |||||||  || |||| || ||||||||    
T  42636433 acttttttgaataataattactaaattt 42636460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 28207770 - 28207636
Alignment:
Q  13 ttaaggaaaatgttaacgagttctcccgggacactctttaagcac-tttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattat 111  Q
    |||||| ||||||||||||||  ||||   ||||||||||||||| |||||| || |||||||||||||||||||||| | |||||| |||||||||| |    
T  28207770 ttaagggaaatgttaacgagta-tccccttacactctttaagcacctttaaatggaaagtttttaatgaaaagttgtgtattgaatgcattggaaattgt 28207672  T
Q  112 aatagttgactttttaaaagaatagttgctaaattt 147  Q
    |||||||||||||||||||||||  ||| |||||||    
T  28207671 aatagttgactttttaaaagaattattgttaaattt 28207636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 1369818 - 1369957
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 110  Q
    ||||||||||| ||||||| ||| || || ||||||||||||||||||||||    ||||||||  |||||||||| |  | |||||| ||||||||||     
T  1369818 ttttaaggaaa-tgttaacaagtgcttcctggacactctttaagcactttaattaataagttttatatgaaaagttatctattgaatgcattggaaattg 1369916  T
Q  111 taatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    | ||||||||||||||||||||||| |||||||||||||||    
T  1369917 tgatagttgactttttaaaagaataattgctaaatttagga 1369957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 33013183 - 33013057
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| |||| ||| |||||||||||||||||||   ||||||| || ||||||||||||| | ||| |  |||||||||| |||||||||    
T  33013183 aaatgttaacgagtgctcctggg-cactctttaagcactttaattagtaagttctttatgaaaagttgtgtattgagtacattggaaattgtaatagttg 33013085  T
Q  120 actttttaaaagaatagttgctaaattt 147  Q
    |||||||||||||||| ||| |||||||    
T  33013084 actttttaaaagaataattgttaaattt 33013057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 3146158 - 3146050
Alignment:
Q  41 ggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgc----aatgaatgaattggaaattataatagttgactttttaaaagaatag 136  Q
    |||||||||||||||||||||||  ||||||||||||||||| | |||||    |||||||| |||||||||| |||||||| ||||||||||||||||     
T  3146158 ggacactctttaagcactttaaatagtaagtttttaatgaaacggtgtgcattgaatgaatgcattggaaattgtaatagttaactttttaaaagaataa 3146059  T
Q  137 ttgctaaat 145  Q
    || ||||||    
T  3146058 ttactaaat 3146050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 1135276 - 1135174
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||  | |||||  |||| ||||| ||||||||||||||||||||||||| || ||||    
T  1135276 cactctttaaacactttaaatggtaagtttttaaggaaaagttgtatattgaatacattgaaaattgtaatagttgactttttaaaagaataattactaa 1135177  T
Q  144 att 146  Q
    |||    
T  1135176 att 1135174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 2258049 - 2258173
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 110  Q
    |||| |||||||||||| ||||| | ||||||||| ||||||||||||||||| |||||||||| |||||||||||||| | | |||  |||  |||||     
T  2258049 tttttaggaaaatgttatcgagtgcacccgggacaatctttaagcactttaaatggtaagttttaaatgaaaagttgtgtattaaatacattaaaaattg 2258148  T
Q  111 taatagttgactttttaaaagaata 135  Q
    ||||  || ||||||||||||||||    
T  2258149 taatgattaactttttaaaagaata 2258173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 167857 - 167926
Alignment:
Q  66 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    ||||||||| ||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||    
T  167857 gtaagttttaaatgaaaagttatgtaataaatgcattggaaattataatagttgactttttaaaagaata 167926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 33949534 - 33949645
Alignment:
Q  37 cccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatag 136  Q
    |||| |||||||||||| ||||||||   ||||||| || ||||||||||||| | ||| || ||| |||||| |||||||||| ||||||||| ||||     
T  33949534 cccgagacactctttaaacactttaattagtaagttatttatgaaaagttgtgtattgagtgcatttgaaattgtaatagttgaatttttaaaacaatac 33949633  T
Q  137 ttgctaaattta 148  Q
    || |||||||||    
T  33949634 ttactaaattta 33949645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 2888729 - 2888812
Alignment:
Q  66 gtaagtttttaatgaaaagttgtgcaatgaatgaat----tggaaattataatagttgactttttaaaagaatagttgctaaat 145  Q
    ||||||||||||||||| |||||||| |||||||||    ||||||||||||||||| ||||||||||| |||| || ||||||    
T  2888729 gtaagtttttaatgaaacgttgtgcattgaatgaatgcattggaaattataatagttaactttttaaaaaaataattactaaat 2888812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 35902041 - 35901955
Alignment:
Q  49 tttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||| ||||||   |||||||||||||||||||| || | |||||| |||||||||| ||||| |||||||||||||| ||||    
T  35902041 tttaagcattttaaataataagtttttaatgaaaagttctgtattgaatgcattggaaattgtaataattgactttttaaaaaaata 35901955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 12954876 - 12954740
Alignment:
Q  11 ttttaaggaaaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 109  Q
    ||||| ||||||||||||||||| ||||| | ||||||||||| | |||||||| | ||| |||||| |||||| ||||| | | |||  |||| |||||    
T  12954876 ttttatggaaaatgttaacgagtgtctcc-gagacactctttatgtactttaaatgataaatttttattgaaaaattgtgtattaaatctattgaaaatt 12954778  T
Q  110 ataatagttgactttttaaaagaatagttgctaaattt 147  Q
    ||||||||||| |||| |||| |||| || ||||||||    
T  12954777 ataatagttgatttttaaaaaaaataattactaaattt 12954740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 37427329 - 37427200
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| |  |||| ||||||||||||||||||||| |||||| |||||||||||||||| | | ||| |  |||| ||||| ||||| |||    
T  37427329 aaatgttaacgagtgcctccgg-acactctttaagcactttaaatggtaagattttaatgaaaagttgagtattgattacattgaaaattgtaataattg 37427231  T
Q  120 a---ctttttaaaagaatagttgctaaattt 147  Q
    |    |||||||||||||| || ||||||||    
T  37427230 atttttttttaaaagaataattactaaattt 37427200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 45197530 - 45197399
Alignment:
Q  6 taatgttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattgga 105  Q
    |||| ||||| || |||||||||||||| |  || ||||||||||||| ||| |||||  |||| ||||| ||||||||||| | ||| |||  |||| |    
T  45197530 taattttttatgggaaatgttaacgagtgcctccaggacactctttaaacacattaaatagtaaattttttatgaaaagttgggtaatcaatccattgaa 45197431  T
Q  106 aattataatagttgactttttaaaagaatagt 137  Q
    ||||  ||| |||||||||||||| |||||||    
T  45197430 aattgcaattgttgactttttaaaggaatagt 45197399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 36355944 - 36356022
Alignment:
Q  40 gggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||||| | | |||| ||| ||||||  |||||||    
T  36355944 gggacactatttaagtactttaaatggtaagtttttaatgaaaagttgtgtattaaatgcattagaaattgcaatagtt 36356022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 12829835 - 12829953
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||| |||||||||||||| |||||   ||||| ||||||||||||||| ||||||||||||||||||| || |  | |||||| ||||  |||| ||||    
T  12829835 aagggaaatgttaacgagtgctcccaa-acact-tttaagcactttaaatggtaagtttttaatgaaaaattatatattgaatgcattgttaattgtaat 12829932  T
Q  115 agttgactttttaaaagaata 135  Q
    | | |||||||||||| ||||    
T  12829933 aatagactttttaaaataata 12829953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 5589043 - 5588984
Alignment:
Q  76 aatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||| || || ||| |||| |||| |||||||||||||||||||||||||||||||    
T  5589043 aatgaaaatttttgtaattaatgcattgaaaattataatagttgactttttaaaagaata 5588984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 17081394 - 17081465
Alignment:
Q  76 aatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    |||||||||||||||| | | || ||| |||||| |||||||||||||||| ||| |||| |||||||||||    
T  17081394 aatgaaaagttgtgcattcattgcattagaaattgtaatagttgacttttttaaaaaataattgctaaattt 17081465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 26750694 - 26750611
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatg 98  Q
    |||| |||||||||||||| | | |||  ||||||||||||||||||||  ||||| |||||||||||| || |||| ||||||    
T  26750694 aagggaaatgttaacgagtgcgctcggagcactctttaagcactttaaatagtaagattttaatgaaaaattatgcattgaatg 26750611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 9735263 - 9735400
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 110  Q
    ||||| |||||||||||||||||  | | | |||||| |||||  | |||||| | ||| ||||||||||||||||||| | | |||| |||| || | |    
T  9735263 ttttatggaaaatgttaacgagtgtttc-gagacactttttaaatattttaaatgataaatttttaatgaaaagttgtgtattaaatgtattgaaagtca 9735361  T
Q  111 taatagttgactttttaaaagaatagttgctaaatttag 149  Q
    |||||||||||||||| ||| |||| ||  |||||||||    
T  9735362 taatagttgacttttttaaaaaataattattaaatttag 9735400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 12684490 - 12684576
Alignment:
Q  49 tttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||||||||||   ||| |||||||| ||||||| || |||||||| ||| |||||| |||||||||| | ||| ||||||||    
T  12684490 tttaagcactttaaataataaatttttaattaaaagttttgtaatgaatgcattagaaattgtaatagttgattctttgaaagaata 12684576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 24695856 - 24695760
Alignment:
Q  49 tttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatt 146  Q
    ||||| |||||||||  ||||||||| ||| |||||||||| | | | || ||| |||||| |||||||||||||||||||| |||| || |||||||    
T  24695856 tttaaacactttaaatagtaagtttt-aataaaaagttgtgtattcactgcattagaaattgtaatagttgactttttaaaataataattactaaatt 24695760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 3463565 - 3463501
Alignment:
Q  12 tttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttta 76  Q
    |||||||||||||||||||  | ||| ||| ||||||||||||||||  ||| ||||||||||||    
T  3463565 tttaaggaaaatgttaacggatgctctcggaacactctttaagcactcaaaatggtaagttttta 3463501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 3520822 - 3520890
Alignment:
Q  67 taagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||||||||||||||| || | |||||| |||  ||| | |||||||||| ||||||||||||||    
T  3520822 taagtttttaatgaaaagttatgtattgaatgcattaaaaactgtaatagttgattttttaaaagaata 3520890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 37813426 - 37813497
Alignment:
Q  77 atgaaaagttgtgcaatgaatgaattggaaattataatagttgac-tttttaaaagaatagttgctaaattt 147  Q
    ||||||||||||| | | |||| |||||||||| |||| |||||| |||||||||||||| || ||||||||    
T  37813426 atgaaaagttgtgtattcaatgcattggaaattgtaatggttgacttttttaaaagaataattactaaattt 37813497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 884532 - 884486
Alignment:
Q  43 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtg 89  Q
    |||||||||||||||||||||  | |||||||||||||||| |||||    
T  884532 acactctttaagcactttaaattgaaagtttttaatgaaaaattgtg 884486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 12545034 - 12544988
Alignment:
Q  105 aaattataatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    |||||||||||||||||||||| ||| |||| || ||||||||||||    
T  12545034 aaattataatagttgactttttgaaataataattactaaatttagga 12544988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 16723169 - 16723222
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggta 68  Q
    |||| |||||||||||||| | |||| |||||| ||||||||||||||| ||||    
T  16723169 aagggaaatgttaacgagtgcccccgagacactttttaagcactttaaatggta 16723222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 33067595 - 33067531
Alignment:
Q  66 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaa 130  Q
    ||||||||| ||||||||||| || | |||||| ||| || ||| ||||| ||||||||||||||    
T  33067595 gtaagttttaaatgaaaagttttgtattgaatgcattagacattgtaataattgactttttaaaa 33067531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 47187785 - 47187915
Alignment:
Q  16 aggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataata 115  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||| ||| ||||||||||||||||||| || || | |||||| ||||||||||||||||    
T  47187785 aggaaaatgttaacgagta-tcccgtgacactctttaaacacttaaaatggtaagtttttaatgaaaaattatgtattgaatgcattggaaattataata 47187883  T
Q  116 gttgactttttaaaagaatagttgctaaattt 147  Q
    ||||| |||||||| ||||| || ||||||||    
T  47187884 gttgattttttaaatgaataattactaaattt 47187915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 2864285 - 2864172
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||| |||||||||||||| | |||||  ||||||||||||||||||||  |||||||||||||||||||||||| | |||||| |||||||||| ||||    
T  2864285 aagggaaatgttaacgagtgc-cccggagcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaat 2864187  T
Q  115 agttgactttttaaa 129  Q
    |||||||||||||||    
T  2864186 agttgactttttaaa 2864172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 38748683 - 38748815
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 113  Q
    ||||| |||||||||||||| | ||| || |||||||||||||||||||   ||||||| || ||||||||||||| | ||| || |||| |||||||||    
T  38748683 taagggaaatgttaacgagtgcccccagg-cactctttaagcactttaattagtaagttatttatgaaaagttgtgtattgagtgcattgaaaattataa 38748781  T
Q  114 tagttgactttttaaaagaatagttgctaaattt 147  Q
    |||||||||||||||||||||| || ||||||||    
T  38748782 tagttgactttttaaaagaataatttctaaattt 38748815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 43396976 - 43397092
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 113  Q
    ||||| |||||||||||||| | | |||  ||||| |||| |||||||||  |||||||||||||||||||||||| | | |||| ||||||||||||||    
T  43396976 taagggaaatgttaacgagtgccctcggcgcactcgttaaacactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattggaaattataa 43397075  T
Q  114 tagttgactttttaaaa 130  Q
    |||||||||||||||||    
T  43397076 tagttgactttttaaaa 43397092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 45640685 - 45640559
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    ||||||||||||||   |||| ||||||||||||||| ||||||  |||||||||| ||||||| ||||| |||||||| |||| ||||||||||| |||    
T  45640685 aaatgttaacgagtgtccccgagacactctttaagcattttaaatagtaagtttttgatgaaaa-ttgtgtaatgaatgcattgaaaattataataattg 45640587  T
Q  120 actttttaaaagaatagttgctaaattt 147  Q
    ||||||| |||||||||||  |||||||    
T  45640586 actttttgaaagaatagttcttaaattt 45640559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 39150697 - 39150590
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    |||||||||||||||||||   ||||| |||||||||||| || || | |||||| |||| ||||| ||||||||||||||||| ||||||| || ||||    
T  39150697 cactctttaagcactttaactagtaagattttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattactaa 39150598  T
Q  144 atttagga 151  Q
    ||||||||    
T  39150597 atttagga 39150590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 34409872 - 34409773
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    |||||||||||||| || | |||||| |||||| |||||||||| |||||||||||||||||||  |||| | |||||| |||||||||||||||| |||    
T  34409872 aaatgttaacgagtgcttctgggacattctttatgcactttaaatggtaagtttttaatgaaaa-atgtgtattgaatgcattggaaattataataattg 34409774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 44829415 - 44829284
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||| |||| |||||||||  | ||||||||||||||||| |||||||  |||||||||| ||| |||||||||| | |||||| |||  ||||| ||||    
T  44829415 aagggaaatattaacgagtgtttccgggacactctttaagtactttaatcggtaagtttt-aataaaaagttgtgtattgaatgtattaaaaattgtaat 44829317  T
Q  115 agttgactttttaaaagaatagttgctaaattt 147  Q
    ||||||| |||| |||||||| || ||||||||    
T  44829316 agttgacctttttaaagaataattactaaattt 44829284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 44329745 - 44329620
Alignment:
Q  10 gttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 109  Q
    ||||| ||| ||||||||||||||  | ||  |||| ||||||| |||||||||  | ||||||||| | |||| || || | |||||| |||| |||||    
T  44329745 gttttgagggaaatgttaacgagtgtttccacgacattctttaaacactttaaatagaaagtttttagtaaaaaattatgtattgaatgcattgaaaatt 44329646  T
Q  110 ataatagttgactttttaaaagaata 135  Q
    ||||||||||||||||||||||||||    
T  44329645 ataatagttgactttttaaaagaata 44329620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 14746160 - 14746294
Alignment:
Q  13 ttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 112  Q
    ||||||||||||||||||||| | |||| | ||||||| |||||||||||   ||||||| |  ||||||||||||| | | |  | |||| ||||||||    
T  14746160 ttaaggaaaatgttaacgagtgcccccgaggcactcttcaagcactttaattagtaagttctatatgaaaagttgtgtattcatagcattgaaaattata 14746259  T
Q  113 atagttgactttttaaaagaatagttgctaaattt 147  Q
    | |||||| ||||||| | |||| |||||||||||    
T  14746260 acagttgattttttaagaaaataattgctaaattt 14746294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 34232672 - 34232805
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaa-aggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 112  Q
    ||||| |||||||||||||| | | ||| ||||||||||||||| ||||| || | | |||||||     ||||||| | |||| | |||| ||||| ||    
T  34232672 taagggaaatgttaacgagtgccctcggaacactctttaagcaccttaaatagttgactttttaa-----agttgtgtattgaaagcattgaaaattgta 34232766  T
Q  113 atagttgactttttaaaagaatagttgctaaatttagga 151  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  34232767 atagttgactttttaaaagaataattgctaaattaagga 34232805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 8794504 - 8794424
Alignment:
Q  71 tttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    ||||| || |||||||||| |  || || |||| ||||||||||||||||||||||||||||||| || ||||||||||||    
T  8794504 ttttttataaaaagttgtgtatggagtgcattgaaaattataatagttgactttttaaaagaataattactaaatttagga 8794424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 31889278 - 31889186
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatg-aaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||| | | |||| ||| |||||  ||||||||||||||| |||| ||||    
T  31889278 cactctttaagcattttaaatggtaagtttttaatgaaaaagttgtgtattaaatgcattagaaatcgtaatagttgacttttaaaaaaaata 31889186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 39156380 - 39156273
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaag----ttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttg 139  Q
    |||| ||||| ||||||||| ||||| |||||||| ||||     ||||| | |||||| |||||||||| || |||||||||||||||||||||| ||     
T  39156380 cactttttaaacactttaaatggtaaatttttaataaaaaaaaaattgtgtattgaatgcattggaaattgtagtagttgactttttaaaagaataatta 39156281  T
Q  140 ctaaattt 147  Q
    ||||||||    
T  39156280 ctaaattt 39156273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 7212885 - 7212785
Alignment:
Q  42 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgct 141  Q
    |||||||||||| |||||||||  ||||||||| ||| ||||||||     |||||| |||||||||| |||| ||| |||||||||||| ||| || ||    
T  7212885 gacactctttaaacactttaaattgtaagttttaaataaaaagttg-----tgaatgcattggaaattgtaattgttaactttttaaaagtataattact 7212791  T
Q  142 aaattt 147  Q
    ||||||    
T  7212790 aaattt 7212785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 604444 - 604508
Alignment:
Q  66 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaa 130  Q
    ||||||| |||||||||| ||||| | ||| || |||||||||||||||| ||||||||||||||    
T  604444 gtaagttcttaatgaaaaattgtgtattgagtgcattggaaattataataattgactttttaaaa 604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 17552972 - 17552843
Alignment:
Q  18 gaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagt 117  Q
    |||||||||||||||| || | ||  | ||||||||| |||||||||||| |||||||||  |||| ||||  | | |||  |||  |||||||||||||    
T  17552972 gaaaatgttaacgagtgcttcagg--ctctctttaagtactttaaaaggtcagtttttaacaaaaaattgtatattaaatacattaaaaattataatagt 17552875  T
Q  118 tgactttttaaaagaatagttgctaaatttag 149  Q
    ||||||||||||| |||| ||  |||||||||    
T  17552874 tgactttttaaaaaaataattattaaatttag 17552843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 38491309 - 38491233
Alignment:
Q  71 tttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    ||||||||||||| ||||| | |||||| |||| ||||| |||||||||||||||||| | |||| || ||||||||    
T  38491309 tttttaatgaaaaattgtgtattgaatgcattgtaaattgtaatagttgactttttaacataataattactaaattt 38491233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 4851232 - 4851321
Alignment:
Q  40 gggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaa 129  Q
    |||| ||||||||||||||||||   ||||||| || ||||||||||| | | | | || ||| |||||| |||||||||||||||||||    
T  4851232 gggatactctttaagcactttaattagtaagttctttatgaaaagttgggtagtaagtgcatttgaaattgtaatagttgactttttaaa 4851321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 44329581 - 44329488
Alignment:
Q  42 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    ||||||||||||||||||||||    || |||||||| ||||||| |  | | |||| | || ||||||||||| |||||||||||||||||||    
T  44329581 gacactctttaagcactttaaatataaaatttttaataaaaagttatatattaaatgcactgaaaattataataattgactttttaaaagaata 44329488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 40460725 - 40460805
Alignment:
Q  55 cactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||||  |||||||||||||||||| ||||  | ||||| ||||||||| | ||||| |||| |||||||| |||||    
T  40460725 cactttaaatagtaagtttttaatgaaaaattgtatattgaataaattggaaactgtaataattgattttttaaatgaata 40460805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 2994940 - 2995065
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    ||||||||||| || | ||||| || || ||||| |||||||||  ||||||||||| | |||||||||| | | |   ||||| ||||||||||||||     
T  2994940 aaatgttaacgcgtgcccccggcactct-tttaaacactttaaatagtaagttttta-taaaaagttgtgtatttacaaaattgaaaattataatagttt 2995037  T
Q  120 actttttaaaagaatagttgctaaattt 147  Q
    ||||||||||| |||| || ||||||||    
T  2995038 actttttaaaataataattactaaattt 2995065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 36563814 - 36563730
Alignment:
Q  47 tctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaa 133  Q
    ||||||| ||||||||| |  |||||||| ||||||| ||||| | | |||| |||| ||||||||||||||||| |||| ||||||    
T  36563814 tctttaaacactttaaatg--aagttttttatgaaaaattgtgtatttaatgcattgaaaattataatagttgacgttttgaaagaa 36563730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 3982408 - 3982277
Alignment:
Q  15 aaggaaaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 113  Q
    |||| |||||||||||||| ||||| | | |||||||||| |||||||||  |||| |||||| | |||||||||  | | |||| |||  |||||||||    
T  3982408 aagggaaatgttaacgagtgtctccggtg-cactctttaaacactttaaatagtaaatttttatt-aaaagttgtctattcaatgcattataaattataa 3982311  T
Q  114 tagttgactttttaaaagaatagttgctaaattt 147  Q
    |||||||||||||  || |||| || ||||||||    
T  3982310 tagttgactttttctaaaaataattactaaattt 3982277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 8365596 - 8365511
Alignment:
Q  66 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    ||||||||||| |||||| |  || | |||||| |||| | ||| |||||||||| |||||||||||||| ||  |||||||||||    
T  8365596 gtaagtttttattgaaaaatgatgtattgaatgcattgaagattgtaatagttgattttttaaaagaataattattaaatttagga 8365511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 26811258 - 26811330
Alignment:
Q  79 gaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    ||||||||||  | || ||| |||||||||| |||||||| | |||||||||||||| || |||||| |||||    
T  26811258 gaaaagttgtatattgtatgtattggaaattctaatagttaattttttaaaagaataattactaaatatagga 26811330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 9448945 - 9449047
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||| | |||||| |||| |||||||||||||||| |||||||||||||| || ||||    
T  9448945 cactctttaaacactttaaatggtaagtttttaatgaaaagttgtgtattgaatgtattgaaaattataatagttga-tttttaaaagaataattactaa 9449043  T
Q  144 attt 147  Q
    ||||    
T  9449044 attt 9449047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 19890177 - 19890287
Alignment:
Q  41 ggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgc 140  Q
    ||||| ||||||||||||| |||   ||||||||||||||||||||||| | | |||| |||||||||| ||||||||||||||||||||||||| || |    
T  19890177 ggacattctttaagcacttaaaataataagtttttaatgaaaagttgtgtattaaatgcattggaaattgtaatagttgactttttaaaagaataattac 19890276  T
Q  141 taaatttagga 151  Q
    |||||||||||    
T  19890277 taaatttagga 19890287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 41933285 - 41933143
Alignment:
Q  5 ttaatgttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattgg 104  Q
    ||||| ||||| ||||||| |||||||||  ||||||  |||||||||||||||||||   |||| ||||| || |||||||||  | ||| || ||||     
T  41933285 ttaattttttatggaaaatattaacgagtgttcccggagcactctttaagcactttaattagtaaattttttataaaaagttgtttactgagtgcattga 41933186  T
Q  105 aaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  41933185 aaattgtaatagttgactttttaaaagaataattgctaaattt 41933143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 1334847 - 1334966
Alignment:
Q  16 aggaaaatgttaacgagttctcccggga-cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||||||||||||||| || |||| ||| |||||||||||||||||||| | ||||||||||||||||| ||||  | |||||| |||||||||| ||||    
T  1334847 aggaaaatgttaacga-ttgtccccggagcactctttaagcactttaaatgataagtttttaatgaaaaattgtatattgaatgcattggaaattgtaat 1334945  T
Q  115 agttgactttttaaaagaata 135  Q
    |||||| ||||| ||||||||    
T  1334946 agttgatttttttaaagaata 1334966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 31452314 - 31452437
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    ||||||||||||||  |||||| ||| | |||||||||||||||  ||||||||||||| |||||||||| | |||||| |||| ||||| |||| ||||    
T  31452314 aaatgttaacgagtgttcccggaacattatttaagcactttaaatagtaagtttttaat-aaaagttgtgtattgaatgcattgaaaattgtaattgttg 31452412  T
Q  120 actttttaaaagaatagttgctaaa 144  Q
    |||||||||||||||| || |||||    
T  31452413 actttttaaaagaataattactaaa 31452437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 31017271 - 31017402
Alignment:
Q  16 aggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataata 115  Q
    |||||||||||||||||| |   |||| || ||||||||||||||||| |  |||||||||||||||||||||| | | |||| |||| |||||| ||||    
T  31017271 aggaaaatgttaacgagtgccttcggggcattctttaagcactttaaatgaaaagtttttaatgaaaagttgtgtattaaatgcattgaaaattaaaata 31017370  T
Q  116 gttgactttttaaaagaatagttgctaaattt 147  Q
     |||||||||| |||||||| || ||||||||    
T  31017371 tttgacttttttaaagaataattactaaattt 31017402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 19514986 - 19514879
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    ||||||||||||||||||||  |||||||||  ||||||||||||  | | | || ||||  |||||||||||||||||||| ||||||||| ||| |||    
T  19514986 cactctttaagcactttaaattgtaagttttatatgaaaagttgtatattcattgcattgataattataatagttgacttttaaaaagaataattgttaa 19514887  T
Q  144 atttagga 151  Q
    ||||||||    
T  19514886 atttagga 19514879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 34904752 - 34904928
Alignment:
Q  17 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 116  Q
    ||||||||| ||||||| || ||||  ||||||||||||||||||||  ||||||| |||||||||| || || | | |||  |||  ||||| ||||||    
T  34904752 ggaaaatgtcaacgagtgcttccggagcactctttaagcactttaaattgtaagttattaatgaaaaattttgtattaaattcattaaaaattgtaatag 34904851  T
Q  117 ttgactttttaaaagaatagttgctaaa----------tttaggagtgccccgagagcactcgttaacaagacccat 183  Q
    |||| |||||||||||||| || |||||          || | |||||||| |||||||||||||||||||||||||    
T  34904852 ttgattttttaaaagaataattactaaatatgagatacttaaagagtgcccagagagcactcgttaacaagacccat 34904928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 15505687 - 15505568
Alignment:
Q  16 aggaaaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||||||||||||||||| ||||   || ||||||| || |||||||||  ||||||||  |||||||||||||| | |||||| |||| ||||||||||    
T  15505687 aggaaaatgttaacgagtgtctctgtgg-cactcttgaaacactttaaatagtaagtttggaatgaaaagttgtgtattgaatgtattgaaaattataat 15505589  T
Q  115 agttgactttttaaaagaata 135  Q
    |||| ||||||| ||||||||    
T  15505588 agtttactttttgaaagaata 15505568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 4762464 - 4762361
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    |||| ||||| |||||||||  |||| |||||||| |||| ||||| | |||||| |||| |||||||||||||||||||| ||||| |||| || ||||    
T  4762464 cactttttaatcactttaaatagtaaatttttaataaaaaattgtgtattgaatgcattgaaaattataatagttgactttataaaataataattactaa 4762365  T
Q  144 attt 147  Q
    ||||    
T  4762364 attt 4762361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 29239235 - 29239326
Alignment:
Q  39 cgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaa 130  Q
    ||||||||||||||||||||||||   |||| | ||||||||||| | ||| | |||||| |||| ||||| ||||||||||||||||||||    
T  29239235 cgggacactctttaagcactttaattagtaaatctttaatgaaaaatggtgtattgaatgcattgaaaattgtaatagttgactttttaaaa 29239326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 7673286 - 7673202
Alignment:
Q  67 taagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    ||||||||  || |||||||||| | | |||| |||| ||||| ||||||||||||||| || |||||| |||||||||||||||    
T  7673286 taagttttatataaaaagttgtgtactaaatgtattgaaaattgtaatagttgacttttaaagagaataattgctaaatttagga 7673202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 9173696 - 9173803
Alignment:
Q  43 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaat-gaatgaattggaaattataatagttgactttttaaaagaatagttgct 141  Q
    ||||||||||| ||||||||   | |||||||| ||||||| ||||| | | || || |||| ||||| |||||||||| ||||||||| |||| |||||    
T  9173696 acactctttaaacactttaattagcaagttttttatgaaaaattgtgtatttgattgtattgaaaattgtaatagttgattttttaaaaaaataattgct 9173795  T
Q  142 aaatttag 149  Q
    ||||||||    
T  9173796 aaatttag 9173803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 20065020 - 20064919
Alignment:
Q  49 tttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattta 148  Q
    |||||||||||||||  | ||| ||||| |||||| ||||| | | |||  |||| ||||| ||||||||||||||||||||||||| || ||| |||||    
T  20065020 tttaagcactttaaatagaaaggtttta-tgaaaaattgtgtatttaatacattgaaaattgtaatagttgactttttaaaagaataattactatattta 20064922  T
Q  149 gga 151  Q
    |||    
T  20064921 gga 20064919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 38533864 - 38533962
Alignment:
Q  48 ctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    ||||||||| || |||  |||||||| ||| ||||| ||||| | |||||| ||| ||||||| ||||||||||| ||||||| |||| || ||||||||    
T  38533864 ctttaagcatttgaaatagtaagtttgtaaagaaaaattgtgtattgaatgcattagaaattacaatagttgactatttaaaa-aataattactaaattt 38533962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 37993190 - 37993088
Alignment:
Q  47 tctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatt 146  Q
    ||||||| || ||||||  |||| |||||||| |||| || || | | |||| |||| ||||| |||||||||| ||||| |||||||||||  ||||||    
T  37993190 tctttaaacattttaaatagtaaatttttaataaaaaattatgtattaaatgcattgaaaattgtaatagttgattttttgaaagaatagttattaaatt 37993091  T
Q  147 tag 149  Q
    |||    
T  37993090 tag 37993088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 41551425 - 41551385
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaag 54  Q
    |||||||||||||||||||| | |||||| |||||||||||    
T  41551425 taaggaaaatgttaacgagtgcccccggggcactctttaag 41551385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 43228867 - 43228919
Alignment:
Q  95 aatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    ||||||||  ||||||||||| || |||||||||| ||||| |||||||||||    
T  43228867 aatgaattaaaaattataataattaactttttaaaggaataattgctaaattt 43228919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 51351396 - 51351287
Alignment:
Q  40 gggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttg 139  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||| | | |||| |||||||||||||||| |  |||||||||||||||| ||     
T  51351396 gggacactctttaagcactttaaaaagtaagtttttaatgaaaaattgtgtattaaatgtattggaaattataatactaaactttttaaaagaataatta 51351297  T
Q  140 ctaaatttag 149  Q
     |||||||||    
T  51351296 ttaaatttag 51351287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 29083866 - 29083998
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaag-gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    |||||||||||||| |  || ||| ||||||||||||||||||||  ||||||||||| |||||||||||| | | |||| |||  ||||| ||||||||    
T  29083866 aaatgttaacgagtgcctccaggatactctttaagcactttaaaatagtaagtttttattgaaaagttgtgtattaaatgcattaaaaattgtaatagtt 29083965  T
Q  119 gactttttaaaagaatagttgctaaatttagga 151  Q
     |||||||||||||||| || |||| |||||||    
T  29083966 aactttttaaaagaataattactaagtttagga 29083998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 48180132 - 48180264
Alignment:
Q  14 taaggaaaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 112  Q
    ||||| |||||||||||| | ||||| || ||||||||| | |||||||||  |||||||||| |||||| |||| | ||  |||| |||||||||| ||    
T  48180132 taagggaaatgttaacgaatatctcc-ggaacactcttttatcactttaaatagtaagttttttatgaaatgttgggtaaccaatgcattggaaattgta 48180230  T
Q  113 atagttgactttttaaaagaatagttgctaaatt 146  Q
    ||||||||||||||||||||||| ||| ||||||    
T  48180231 atagttgactttttaaaagaataattgttaaatt 48180264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 42845977 - 42846104
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatg-aattggaaattataatagtt 118  Q
    ||||||||| |||| |||||  |||||||||||||     |||| | ||||||||||||||||||||||| | |||||| ||||| |||||  |||||||    
T  42845977 aaatgttaaggagtgctcccatgacactctttaag-----taaatgataagtttttaatgaaaagttgtgtattgaatgcaattgaaaattgaaatagtt 42846071  T
Q  119 gactttttaaaagaatagttgctaaatttagga 151  Q
    |||||||| |||||||| || ||||||||||||    
T  42846072 gactttttcaaagaataattactaaatttagga 42846104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 12086721 - 12086857
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 110  Q
    ||||| || |||||||||||||| | | ||||||||| |||||| |||  |||  ||||||||||||||||||  |||| | |||||| | || ||||||    
T  12086721 ttttatgggaaatgttaacgagtgccctcgggacactatttaagtactcgaaatagtaagtttttaatgaaaaaatgtgtattgaatgcactgaaaatta 12086820  T
Q  111 taatagttgactttttaaaagaatagttgctaaattt 147  Q
    |||||| || ||||| ||||||||| || ||||||||    
T  12086821 taatagatgtcttttaaaaagaataattactaaattt 12086857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 40673543 - 40673458
Alignment:
Q  50 ttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||||||||| | ||||||||||| ||||||| ||| | |||||  ||| |||||| |||||||||| ||||||||||||||    
T  40673543 ttaagcactttaaatgataagtttttaaagaaaagtagtgtattgaatatattagaaattgtaatagttgaatttttaaaagaata 40673458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 26900014 - 26900106
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgac-tttttaaaagaata 135  Q
    |||||||||| ||||||||| ||||| ||||  |||||||||| || ||| |||| |||| ||||| ||||||||||| ||||||||||||||    
T  26900014 cactctttaaacactttaaatggtaaattttatatgaaaagttatgtaataaatgcattgaaaattgtaatagttgacttttttaaaagaata 26900106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 39551814 - 39551949
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 110  Q
    |||||||| |||||||||||||| ||  | ||  ||||||||| ||||||||   ||||||| || ||||||||||||  | ||| || |||| |||||     
T  39551814 ttttaagggaaatgttaacgagtgctttcagggtactctttaaacactttaattagtaagttctttatgaaaagttgtttattgagtgtattgaaaattg 39551913  T
Q  111 taatagttgactttttaaaagaatagttgctaaattt 147  Q
    || ||||||| |||||||||||||| |||||||||||    
T  39551914 ta-tagttgattttttaaaagaataattgctaaattt 39551949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 22730509 - 22730568
Alignment:
Q  76 aatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||| || || ||| |||| |||| |||||||||||||||||||||||||||||||    
T  22730509 aatgaaaatttttgtaattaatgcattgaaaattataatagttgactttttaaaagaata 22730568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 24791588 - 24791526
Alignment:
Q  67 taagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaa 129  Q
    |||||||||||||||||||| || | |||||  |||| ||||| |||||||||||||||||||    
T  24791588 taagtttttaatgaaaagttatgtattgaatacattgaaaattgtaatagttgactttttaaa 24791526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 41309842 - 41309936
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaat---gaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||||| ||||||||| | ||||||||||||||||| |||| | ||    |||| |||| ||||| ||||| || ||||||||||||||||    
T  41309842 cactctttaaacactttaaatgataagtttttaatgaaaaattgtactatatcaaatgcattgaaaattgtaataattaactttttaaaagaata 41309936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 8957755 - 8957697
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttt 74  Q
    ||||||||||||||||||| ||||| ||||||||||||||  |||||||| |||| ||||    
T  8957755 aaggaaaatgttaacgagtgctccc-ggacactctttaagatctttaaaaagtaactttt 8957697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 26143214 - 26143168
Alignment:
Q  43 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtg 89  Q
    ||||||||||| || |||||| ||||||||||||||||||| |||||    
T  26143214 acactctttaaacattttaaatggtaagtttttaatgaaaatttgtg 26143168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 42939925 - 42939856
Alignment:
Q  66 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    ||||||||| |||||||| ||||| | | |||  |||| |||||  ||||||||||||||||||||||||    
T  42939925 gtaagttttaaatgaaaaattgtgtattaaattcattgaaaattgcaatagttgactttttaaaagaata 42939856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 49362368 - 49362436
Alignment:
Q  67 taagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||||||| |||| ||||  | | |||  |||||||||| |||||||| ||||||||||||||||    
T  49362368 taagtttttaataaaaaattgtatattaaatacattggaaattgtaatagttaactttttaaaagaata 49362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 30801886 - 30801766
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 113  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||||||  | ||||||||||| |||||||||| | |||||| |||| |||||||||    
T  30801886 taaggaaaatgttaacgagtacccccgggacattctttaagcactttaaatagcaagtttttaattaaaagttgtgtattgaatgcattgaaaattataa 30801787  T
Q  114 tagttgactttttaaaagaat 134  Q
    || ||  ||||| ||||||||    
T  30801786 tacttagcttttcaaaagaat 30801766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 17215647 - 17215777
Alignment:
Q  17 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 116  Q
    ||||||||||||||||| |   |||  |||||||||||||||||||| |||||||||||||| |||| ||||  | |||||| |||| ||||| ||||||    
T  17215647 ggaaaatgttaacgagtgccttcggatcactctttaagcactttaaatggtaagtttttaataaaaaattgtttattgaatgcattgaaaattgtaatag 17215746  T
Q  117 ttgactttttaaaagaatagttgctaaattt 147  Q
    |||||||||||||| |||| || ||||||||    
T  17215747 ttgactttttaaaaaaataattactaaattt 17215777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 31855174 - 31855078
Alignment:
Q  39 cgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    ||||| |||||||||||||||||||  |||||||||||||||||| ||||  | |||||| |||||||||| |||||||||||||||||||| ||||    
T  31855174 cgggatactctttaagcactttaaatagtaagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgactttttaaaataata 31855078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 9762939 - 9762828
Alignment:
Q  21 aatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaa-tgaaaagttgtgcaatgaatgaattggaaattataatagttg 119  Q
    ||||||||||||| |||| ||  |||||||||| ||||||||| ||||| ||||||| |||||||||||| | |||||| ||| |||||||||||| |||    
T  9762939 aatgttaacgagtgctccggg--cactctttaatcactttaaatggtaaatttttaaatgaaaagttgtgtactgaatgtattagaaattataataattg 9762842  T
Q  120 actttttaaaagaa 133  Q
    ||||||||||||||    
T  9762841 actttttaaaagaa 9762828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 32823821 - 32823701
Alignment:
Q  15 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 114  Q
    |||| |||||||||||||| |  ||||  ||||||||||||||||||||    |||||||||||||||||||||| | |||||| |||| ||||| ||||    
T  32823821 aagggaaatgttaacgagtgcctccggagcactctttaagcactttaaataacaagtttttaatgaaaagttgtgtattgaatgcattgaaaattgtaat 32823722  T
Q  115 agttgactttttaaaagaata 135  Q
    | ||||||||| |||||||||    
T  32823721 aattgacttttcaaaagaata 32823701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 1841084 - 1840994
Alignment:
Q  58 tttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattta 148  Q
    |||||| | |||||||||||| |||||||||| | |||||| |||||||||| |||||||||| |||||||||||||| ||  ||||||||    
T  1841084 tttaaatgataagtttttaattaaaagttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataattattaaattta 1840994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 7421817 - 7421684
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 113  Q
    |||| |||||||||||||||  ||| | ||||||||||||||||||||||  ||||  ||||| | |||||||||| | | |||| |||| ||||| |||    
T  7421817 taagaaaaatgttaacgagtgttcctgtgacactctttaagcactttaaatagtaaagttttattaaaaagttgtgtattaaatgcattgaaaattgtaa 7421718  T
Q  114 tagttgactttttaaaagaatagttgctaaattt 147  Q
    || |||||||||||||  |||| || ||||||||    
T  7421717 tatttgactttttaaataaataattactaaattt 7421684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 23399226 - 23399121
Alignment:
Q  43 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgcta 142  Q
    |||||||||||| ||||||||   ||||||||  || ||||||| ||||| ||||  |||| |||||||||||||| |||||||||||||||| || |||    
T  23399226 acactctttaagtactttaaatattaagttttatattaaaagttatgcaacgaatacattgaaaattataatagttaactttttaaaagaataatttcta 23399127  T
Q  143 aattta 148  Q
    ||||||    
T  23399126 aattta 23399121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 28874539 - 28874410
Alignment:
Q  19 aaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    ||||||||||||||| |  |||||| | ||||||| || ||||||    |||||||||||||||| || || | |||||| |||||||||||||||||||    
T  28874539 aaaatgttaacgagtgcctccgggatattctttaaacattttaaataacaagtttttaatgaaaaattttgtattgaatgcattggaaattataatagtt 28874440  T
Q  119 gactttttaaaagaatagttgctaaattta 148  Q
    || |||| ||||||||| || |||| ||||    
T  28874439 gatttttcaaaagaataattactaatttta 28874410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 27778900 - 27778762
Alignment:
Q  11 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 110  Q
    |||| ||||||||||||||| ||  | ||| | |||||||||||||||||||| ||||| |||||| |||||| | ||| | |||||| |||| ||||||    
T  27778900 tttttaggaaaatgttaacgtgtgtttccgag-cactctttaagcactttaaatggtaaattttta-tgaaaaat-gtgtattgaatgcattgaaaatta 27778804  T
Q  111 taatagttgacttttt-aaaagaatagttgctaaatttagga 151  Q
    |||| ||||||||||| |||| |||| || ||||||||||||    
T  27778803 taatcgttgactttttaaaaaaaataattactaaatttagga 27778762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 3766383 - 3766301
Alignment:
Q  53 agcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    ||||||||||| | ||||||||  |||||||||| || |||||||| |||  ||||| ||||| |||||||||||||||||||    
T  3766383 agcactttaaatgataagttttatatgaaaagttatgtaatgaatgtattataaattgtaataattgactttttaaaagaata 3766301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 19293446 - 19293551
Alignment:
Q  46 ctctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaat 145  Q
    |||||||||||||||||   ||| |||||| |||||||||||   | ||| || || ||||||| |||||||| ||||||||||| |||| ||| |||||    
T  19293446 ctctttaagcactttaattagtaggttttttatgaaaagttggttattgagtgcatcggaaattgtaatagttaactttttaaaataataattgttaaat 19293545  T
Q  146 ttagga 151  Q
    ||||||    
T  19293546 ttagga 19293551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 5446625 - 5446758
Alignment:
Q  14 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 113  Q
    ||||| |||||||||||||| | ||||| |||||||  | ||||||||||  | || |||||||| |||||| ||||| |||||| |||| ||||| |||    
T  5446625 taagggaaatgttaacgagtgcccccgg-acactctcga-gcactttaaatagcaattttttaattaaaagtggtgcattgaatgcattgaaaattgtaa 5446722  T
Q  114 tagttgactttttaaaagaatagttgctaaatttag 149  Q
     |||||||| || ||||||||| || |||| |||||    
T  5446723 cagttgactattcaaaagaataattactaattttag 5446758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 2865016 - 2864890
Alignment:
Q  20 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagt-ttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    |||||||||| ||| | |||| |||||||||||| || |||||| ||||||| |||| ||||||| ||||| | | |||| |||| ||||| ||||||||    
T  2865016 aaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagttttttgatgaaaaattgtgtatttaatgcattgtaaattgtaatagtt 2864917  T
Q  119 gactttttaaaagaatagttgctaaattt 147  Q
       ||||| ||| |||| |||||||||||    
T  2864916 --atttttgaaaaaataattgctaaattt 2864890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 30739714 - 30739609
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    |||| |||||||| || ||| | ||| ||||||||||||| ||||| | |||||| |||||||||  ||  |||| ||||||||| |||||| || ||||    
T  30739714 cactttttaagcatttaaaatgataaatttttaatgaaaaattgtgtattgaatgcattggaaatcgtaccagttaactttttaatagaataattactaa 30739615  T
Q  144 atttag 149  Q
    ||||||    
T  30739614 atttag 30739609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 1479084 - 1479186
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    |||||||||||||||||||| ||||| ||||| ||| ||| ||||| | | |||| |||| ||||| | ||| ||| ||||||||||||||  || ||||    
T  1479084 cactctttaagcactttaaatggtaaattttt-atgtaaaattgtgtattcaatgcattgaaaattgtcataattgcctttttaaaagaatgattactaa 1479182  T
Q  144 attt 147  Q
    ||||    
T  1479183 attt 1479186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 2692477 - 2692524
Alignment:
Q  100 attggaaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    |||||||||| |||||||||||||||||||| |||| || ||||||||    
T  2692477 attggaaattgtaatagttgactttttaaaataataattactaaattt 2692524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 11720925 - 11720976
Alignment:
Q  100 attggaaattataatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    |||| ||||| ||||||||||||| ||||||||||| ||| |||||||||||    
T  11720925 attgaaaattgtaatagttgacttcttaaaagaataattgttaaatttagga 11720976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 26669292 - 26669361
Alignment:
Q  66 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||| |||||||||||||||| || | | |||  | || ||||| |||||||||||||||||||||||||    
T  26669292 gtaaatttttaatgaaaagttatgtattaaatacagtgaaaattgtaatagttgactttttaaaagaata 26669361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 62492 - 62617
Alignment:
Q  20 aaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    |||||||||||||| ||||| |||  |||||||||||||||||||  ||||||||||||| |||| || || | |||||| |||| ||||  ||||||||    
T  62492 aaatgttaacgagtgtctccggggt-actctttaagcactttaaatagtaagtttttaataaaaaattatgtattgaatgcattgaaaatcgtaatagtt 62590  T
Q  119 gactttttaaaagaatagttgctaaat 145  Q
    ||||||||||||||||| || ||||||    
T  62591 gactttttaaaagaataattactaaat 62617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 20238 - 20330
Alignment:
Q  42 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||||||||||||||||||||| | |||||||||| |||||||||||| | | |||| ||| |||||| |||||||| ||||||||||||||||    
T  20238 gacactctttaagcactttaaatgataagttttta-tgaaaagttgtgtatttaatgcatttgaaattgtaatagttaactttttaaaagaata 20330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 1205 - 1076
Alignment:
Q  19 aaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 118  Q
    ||||||||||||||| |  |||||| | ||||||| || ||||||    |||||||||||||||| || || | |||||| |||||||||||||||||||    
T  1205 aaaatgttaacgagtgcctccgggatattctttaaacattttaaataacaagtttttaatgaaaaattttgtattgaatgcattggaaattataatagtt 1106  T
Q  119 gactttttaaaagaatagttgctaaattta 148  Q
    || |||| ||||||||| || |||| ||||    
T  1105 gatttttcaaaagaataattactaatttta 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 1723 - 1786
Alignment:
Q  72 ttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||| ||||||||||||||| | |||| |||||||||| ||||||||| |||||||||||||||    
T  1723 tttttatgaaaagttgtgcattcaatgcattggaaattgtaatagttggctttttaaaagaata 1786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 950 - 1030
Alignment:
Q  71 tttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatttagga 151  Q
    ||||| |||||||| |||| | | |||  |||| ||||| ||||||||||||||||||||||| | |||||||||||||||    
T  950 ttttttatgaaaagatgtgtattcaatacattgaaaattgtaatagttgactttttaaaagaacaattgctaaatttagga 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 1501 - 1432
Alignment:
Q  66 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 135  Q
    |||| |||||||||||||||| || | | |||  | || ||||| |||||||||||||||||||||||||    
T  1501 gtaaatttttaatgaaaagttatgtattaaatacagtgaaaattgtaatagttgactttttaaaagaata 1432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 103640 - 103741
Alignment:
Q  44 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 143  Q
    ||||||||||||| || |||   ||| ||||||||||||| ||||  | |||||| |||  ||||| ||||| | ||||||||||||||||| || ||||    
T  103640 cactctttaagcatttaaaataataaatttttaatgaaaaattgtatattgaatgcattaaaaattgtaatattcgactttttaaaagaataattactaa 103739  T
Q  144 at 145  Q
    ||    
T  103740 at 103741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 335866 - 335942
Alignment:
Q  71 tttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 147  Q
    ||||||||||||||||||| |  ||||  |||| ||||||||||| || |||||| ||| ||||| || ||||||||    
T  335866 tttttaatgaaaagttgtgtatcgaatacattgaaaattataataattaacttttgaaatgaataattactaaattt 335942  T

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