View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12961_high_6 (Length: 234)
Name: NF12961_high_6
Description: NF12961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12961_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 1379756 - 1379552
Alignment:
| Q |
1 |
atacatataggttcgaaagctggacattttgaagcttcattatatgtatgagacgtcgatgctc-tcttcaaatcaa------------------tagcc |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
1379756 |
atacatataggttcgaaagctggacattttgaagcttcattatatttatgagacgtcgatgctcctcttcaaatcaaacctgcaaatcaaatcaatagcc |
1379657 |
T |
|
| Q |
82 |
aatcaaataagcagccaacatgaaatacaaaccattacatttctcaagaatgaaacaaattaaagcaacaatgtcattttgctacacgggaaaagaaaca |
181 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1379656 |
aatcaaataagcagccaacatgaa-tacaaaccattacatttctcaagaatgaaacaaa-----gcaacaatgtcattttgctacaccggaaaagaaaca |
1379563 |
T |
|
| Q |
182 |
actaatttgtg |
192 |
Q |
| |
|
||||||||||| |
|
|
| T |
1379562 |
actaatttgtg |
1379552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 6605238 - 6605145
Alignment:
| Q |
69 |
caaatcaatagccaatcaaataagcagccaacatgaaatacaaaccattacatttctcaagaatgaaacaaattaaagcaacaatgtcattttgctaca |
167 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6605238 |
caaatcaatagccaatcaaataagtagccaatatgaaataggaaccattacatttctcaagaatgaaac-----aaagcaacaatgtcattttgctaca |
6605145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6605325 - 6605273
Alignment:
| Q |
1 |
atacatataggttcgaaagctggacattttgaagcttcattatatgtatgaga |
53 |
Q |
| |
|
|||||||||||||| ||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
6605325 |
atacatataggttcaaaaacgggtcattttgaagcttcattatatgtatgaga |
6605273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3082152 - 3082088
Alignment:
| Q |
1 |
atacatataggttcgaaagctggacattttgaagcttcattatatgtatgagacgtcgatgctct |
65 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
3082152 |
atacatataggttaaaaagctggtcattttgaagcttcattatatgtatgagatgtcgatcctct |
3082088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 3082066 - 3081997
Alignment:
| Q |
68 |
tcaaatcaatagccaatcaaataagcagccaacatgaaatacaaaccattacatttctcaagaatgaaac |
137 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
3082066 |
tcaaatcaataaccaatcaaataagtagccaatatgaaattgtaaccatcacatttctcaagaatgaaac |
3081997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University