View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12961_high_7 (Length: 216)
Name: NF12961_high_7
Description: NF12961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12961_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 40556296 - 40556480
Alignment:
| Q |
15 |
aaaatacaaaactgatcgaggagaataaggaagaaaagtcactggagcttcaacatcgaaaatggaggaaagtgtttttgtttctagaatattgaatgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40556296 |
aaaatacaaaactgatcgaggagaataaggaagaaaagtcactggagcttcaacatcgaaaatggaggaaagtgtttttgtttctagaatattgaatgaa |
40556395 |
T |
|
| Q |
115 |
tatggtggtgatgattatcggatgatggaaaatttattatgtttgcgatctaagttcttagctaatcaattcaaagatgatgttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40556396 |
tatggtggtgatgattatcggatgatggaaaatttactaagtttgcgatctaagttcttagctaatcaattcaaaaatgatgttt |
40556480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University