View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12961_low_1 (Length: 727)
Name: NF12961_low_1
Description: NF12961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12961_low_1 |
 |  |
|
| [»] scaffold0411 (2 HSPs) |
 |  |  |
|
| [»] scaffold0744 (1 HSPs) |
 |  |  |
|
| [»] scaffold0071 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 581; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 1 - 724
Target Start/End: Complemental strand, 18416993 - 18416260
Alignment:
| Q |
1 |
caaggagatttgtatcctgacccaggcagatacagaaggttggttaggaagctgaattatcgtactatgac--gaccagatatttcgtttgttgttagtg |
98 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
18416993 |
caaggagatttgtatcctgacccaggaagatacagaagtttagttgggaagctgaattatcttactatgactagaccagatatttcgtttgatgttagtg |
18416894 |
T |
 |
| Q |
99 |
ttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtcacctgaaaaaagacttgttta |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
18416893 |
ttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggtttgaatcttgaggtatattaaagggtcacctggaaaaggacttgttta |
18416794 |
T |
 |
| Q |
199 |
ttca----gaggacataccaatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatg |
294 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18416793 |
ttcatacagaggacataccaatattgttggatattcatatgcagattgggcaggtgatgtgaatgatagaagatctacttcaggttattgtgttctaatg |
18416694 |
T |
 |
| Q |
295 |
ggaggaaacttaatttcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagtactgaggcggtgtatcgtgttatgacacatgctacttgtgaac |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
18416693 |
ggaggaaacttaatttcatggaaaagtaaaaagaaaactgttgttgcaaggtcaagtactgaggcggagtatcgtgctatgacacatgctacttgtgaac |
18416594 |
T |
 |
| Q |
395 |
ttgtatggatgaagcacttgttggaagagttgaaattttgtgaactaggtcctatggaacttaagtgtgataat----cggcattgtatctttcgtcaaa |
490 |
Q |
| |
|
|| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18416593 |
ttttatgattgaagcacttgttggaagagtttaaattttgtgaactaggtcctatggaacttaagtgtgataatgagtcggcattgtatctttcgtcaaa |
18416494 |
T |
 |
| Q |
491 |
tccagttttttatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagctcc |
590 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
18416493 |
tccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaacctcttcagtgagctcc |
18416394 |
T |
 |
| Q |
591 |
aatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagctt |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
18416393 |
aatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaactt |
18416294 |
T |
 |
| Q |
691 |
gagggggagtgttgattattctctatttattata |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
18416293 |
gagggggagtgttgattattctctatttattata |
18416260 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 377 - 723
Target Start/End: Original strand, 52964080 - 52964431
Alignment:
| Q |
377 |
cacatgctacttgtgaacttgtatggatgaagcacttgttggaagagttgaaattttgtgaactaggtcctatggaacttaagtgtgataatc----ggc |
472 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||| ||||| |||||||| |||||||||||| | || | |||||||||||| |||||||||| | | |
|
|
| T |
52964080 |
cacatgatacttgtgaacttttatggttgaagcatttgttagaagagttaaaattttgtgaattgggccatatggaacttaaatgtgataatcaatcgac |
52964179 |
T |
 |
| Q |
473 |
attgtatctttcgtcaaatccagttttttatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaa |
572 |
Q |
| |
|
||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
52964180 |
gttgcatctttcgtcaaatcccatttttcatgagaggactaaacacatagaagttgattgccactttatcagagagaagatcctttccgacatcattaaa |
52964279 |
T |
 |
| Q |
573 |
acctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatt |
672 |
Q |
| |
|
||||||||| | |||||||||||||| ||||| |||||||| |||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52964280 |
acctcttcaataagctccaatgatcaactagccgatatcttcaccaaacctctacaaggacctcagattgattgaatatgtaacaagctggatgcatatg |
52964379 |
T |
 |
| Q |
673 |
atatatatggtccagcttgagggggag-tgttgattattctctatttattat |
723 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
52964380 |
atatatatgctccagcttgagggggggttgttgattattctctatttattat |
52964431 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 37 - 331
Target Start/End: Original strand, 52963765 - 52964065
Alignment:
| Q |
37 |
aggttggttaggaagctgaattatcgtactatgac--gaccagatatttcgtttgttgttagtgttgtgagtcaatttttgaactcaccttgtgatagcc |
134 |
Q |
| |
|
||||| ||| ||||||||||||||| ||| ||| ||||||||| || |||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
52963765 |
aggttagttgggaagctgaattatctcactgcgactagaccagatactttgtttgttgttagtgttgtaagtcaatttctgaactcaccttgtgatagcc |
52963864 |
T |
 |
| Q |
135 |
attggaatgtcgtggttcggatcttgaggtatattaaagggtcacctgaaaaaagacttgtttattcaga----ggacataccaatattattggatattc |
230 |
Q |
| |
|
||| || ||| || ||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||| || |||| ||||||| |||||||||| |
|
|
| T |
52963865 |
attcgactgttgtagttcgaatcttgaggtatattaaagggtcacctggaaaaggacttatttattcagacagaggccataacaatattgttggatattc |
52963964 |
T |
 |
| Q |
231 |
agatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaatttcatggaaaagtaaaaagcaa |
330 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52963965 |
agatgcagattgagcaggtgatgttaatgatagaatatctagttcaggttattgtgttttaatgggaggaaacttaatttcatgggaaagtaaaaagcaa |
52964064 |
T |
 |
| Q |
331 |
a |
331 |
Q |
| |
|
| |
|
|
| T |
52964065 |
a |
52964065 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 149 - 395
Target Start/End: Complemental strand, 19937016 - 19936767
Alignment:
| Q |
149 |
gttcggatcttgaggtatattaaagggtcacctgaaaaaagacttgtttattcaga----ggacataccaatattattggatattcagatgcagattggg |
244 |
Q |
| |
|
|||||||||||||||| |||||||||||| | || | || ||||||||||||| | || |||||| | ||| ||| ||||||||||| || |||| |
|
|
| T |
19937016 |
gttcggatcttgaggtgtattaaagggtcgcttggagaatgacttgtttattctaatattggtcataccgaaattgttgaatattcagatgttgactggg |
19936917 |
T |
 |
| Q |
245 |
caggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaatttcatggaaaagtaaaaagcaaactgttgttgcaag |
344 |
Q |
| |
|
||||||| ||||||||||| | | ||||| | ||||||||||| | || ||||||||| ||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
19936916 |
caggtgacgtgaatgataggatgtttacttcatgttattgtgttttgattccaggaaacttg-tttcatggaaaggtaaaaagaaaattgttgttgcaag |
19936818 |
T |
 |
| Q |
345 |
gtcaagtactgaggcggtgtatcgtgttatgacacatgctacttgtgaact |
395 |
Q |
| |
|
|||||||| ||||| | ||||||||||||| | | | ||||||||||||| |
|
|
| T |
19936817 |
gtcaagtagagaggccgagtatcgtgttatggcccgtactacttgtgaact |
19936767 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 563 - 721
Target Start/End: Complemental strand, 19935723 - 19935565
Alignment:
| Q |
563 |
catcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctg |
662 |
Q |
| |
|
||||||||||||| ||||||||| ||| ||||||||| || |||| | || | ||| | ||| ||||||||||| || ||||| ||||||||||| | |
|
|
| T |
19935723 |
catcattaaaaccacttcagtgaactcaaatgatcagttaaatgatgttttctctaaatctctatggggacctcaggtttattatgtatgtaacaagtta |
19935624 |
T |
 |
| Q |
663 |
gatgcatattatatatatggtccagcttgagggggagtgttgattattctctatttatt |
721 |
Q |
| |
|
||||||||| ||||||||| |||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
19935623 |
gatgcatatgatatatatgctccagcttaaagatgagtgttgattattctctatttatt |
19935565 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 419 - 565
Target Start/End: Complemental strand, 19936155 - 19936005
Alignment:
| Q |
419 |
aagagttgaaattttgtgaactaggtcctatggaacttaagtgtgataatcgg----cattgtatctttcgtcaaatccagttttttatgagaggacaaa |
514 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||| ||||||||||| | |||||||| |||| |||||| ||||| |||||| ||| || |
|
|
| T |
19936155 |
aagagttgaaaatttgtgaactagacattatggaatttatgtgtgataatcagttgacattgtatttttcttcaaatgtgatttttcatgagatgactaa |
19936056 |
T |
 |
| Q |
515 |
acacatagaagttgattgtcactttatcagagagaagatactttctagcat |
565 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
19936055 |
acacctagaagttgattgtcactttatcggagacaagattttttctagcat |
19936005 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 632 - 669
Target Start/End: Complemental strand, 11222066 - 11222029
Alignment:
| Q |
632 |
acctcagattgattatatatgtaacaagctggatgcat |
669 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11222066 |
acctcagattgattatatatgtaacaagttggatgcat |
11222029 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 19937309 - 19937257
Alignment:
| Q |
86 |
tttgttgttagtgttgtgagtcaatttttgaactcaccttgtgatagccattg |
138 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||||| ||||| |||||| |
|
|
| T |
19937309 |
tttgttgttagtgttgtgagtcaatttctaaattcaccttttgataaccattg |
19937257 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 724
Target Start/End: Original strand, 33834389 - 33835098
Alignment:
| Q |
1 |
caaggagatttgtatcctgacccaggcagatacagaaggttggttaggaagctgaattatcgtactatgac--gaccagatatttcgtttgttgttagtg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
33834389 |
caaggagatttgtatcctgacccaggcagata----aggttagttgggaagctgaattatcttactatgactagaccagatatttcgtttgctgttagtg |
33834484 |
T |
 |
| Q |
99 |
ttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtcacctgaaaaaagacttgttta |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
33834485 |
ttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtcgcctggaaaaggacttgttta |
33834584 |
T |
 |
| Q |
199 |
ttc----agaggacataccaatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatg |
294 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33834585 |
ttccgacagaggacataccaatattgttggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctacttcaggttattgtgttctaatg |
33834684 |
T |
 |
| Q |
295 |
ggaggaaacttaatttcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagtactgaggcggtgtatcgtgttatgacacatgctacttgtgaac |
394 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
33834685 |
ggaggaaacttaatttcatga--------------------tgttgcaaggtcaagtactgaggcggagtatcgtgctatggcacatgctacttgtgaac |
33834764 |
T |
 |
| Q |
395 |
ttgtatggatgaagcacttgttggaagagttgaaattttgtgaactaggtcctatggaacttaagtgtgataatcgg----cattgtatctttcgtcaaa |
490 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
33834765 |
ttttatggttgaaacacttgttggaagagttgaaattttgtgaactaggtcctatggaacttaagtgtgataatcggtcggcattgtatctttcatcaaa |
33834864 |
T |
 |
| Q |
491 |
tccagttttttatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagctcc |
590 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
33834865 |
tccagtttttcatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttttggcatcattaaaacctcttcagtgagctcc |
33834964 |
T |
 |
| Q |
591 |
aatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagctt |
690 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33834965 |
aatgatcagctagccgatatctttaccaaaccactacgggaacctcggattgattatatatgtaacaagctggatgcatatgatatatatggtccagctt |
33835064 |
T |
 |
| Q |
691 |
gagggggagtgttgattattctctatttattata |
724 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
33835065 |
gagggggagtgttgattattctttatttattata |
33835098 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 37917368 - 37916904
Alignment:
| Q |
1 |
caaggagatttgtatcctgacccaggcagatacagaaggttggttaggaagctgaattatcgtactatgac--gaccagatatttcgtttgttgttagtg |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
37917368 |
caaggagatttgtatcctgacccaagcagatacagaaggttagttgggaaactgaattatcttactatgactagaccagatatttcgtttgctgttagtg |
37917269 |
T |
 |
| Q |
99 |
ttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtcacctgaaaaaagacttgttta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
37917268 |
ttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtcacctggaaaaggacttgttta |
37917169 |
T |
 |
| Q |
199 |
ttcagag----gacataccaatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatg |
294 |
Q |
| |
|
|||||| ||| || ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
37917168 |
ttcagacagaagacgtatcaatattgttggatattcagatgcagattgggcagatgatgtgaatgatagaagatctacttcaggttattgtgttctgatg |
37917069 |
T |
 |
| Q |
295 |
ggaggaaacttaatttcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagtactgaggcggtgtatcgtgttatgacacatgctacttgtgaac |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||| |
|
|
| T |
37917068 |
ggaggaaacttaatttcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagtactgaggtggagtatcgtgttatggcacatgctacttgtgaac |
37916969 |
T |
 |
| Q |
395 |
ttgtatggatgaagcacttgttggaagagttgaaattttgtgaactaggtcctatggaacttaag |
459 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37916968 |
ttttatggttgaagcacttgttggaagagttgaaattttgtgaactaggtcctatggaacttaag |
37916904 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 468 - 724
Target Start/End: Complemental strand, 37915653 - 37915395
Alignment:
| Q |
468 |
tcggcattgtatctttcgtcaaatccagttttttatgagaggacaaaacacatagaagttgattgtcactttatcagagagaaga---tactttctagca |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
37915653 |
tcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagaagatactttctggca |
37915554 |
T |
 |
| Q |
565 |
tcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctgga |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37915553 |
tcattaaaacctcttcagtgagctccaatgatcaactagccgatatctttaccataccactacggggacctcagattgattatatatgtaacaagctgga |
37915454 |
T |
 |
| Q |
665 |
tgcatattatatatatggtccagcttgagggggagtgttgattattctctatttattata |
724 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37915453 |
tgcatatgatatatatggtccatcttga-ggggagtgttgattattctctatttattata |
37915395 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 7566927 - 7566644
Alignment:
| Q |
12 |
gtatcctgaccca-ggcagatacagaaggttggttaggaagctgaattatcgtactatgac--gaccagatatttcgtttgttgttagtgttgtgagtca |
108 |
Q |
| |
|
||||||| ||||| |||| |||||| |||||| || ||| ||||||||||| |||||||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
7566927 |
gtatcctaacccaaggcacatacaggaggttgattgggaggctgaattatctcactatgactagaccagatatttcgtttgatggtagtgttgtgagtca |
7566828 |
T |
 |
| Q |
109 |
atttttgaactcaccttgtgatagccattggaatgtcgtggt---tcggatcttgaggtatattaaagggtcacctgaaaaaag-acttgtttattcaga |
204 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||| | ||||| |||||||| | |||||||||| ||||||||| || || ||||||||| |
|
|
| T |
7566827 |
acttctgaactcaccttgtgatagccattggaatgtcgtggtggttaggatcatgaggtatgt-aaagggtcacttgaaaaaaggacctgcttattcaga |
7566729 |
T |
 |
| Q |
205 |
----ggacataccaatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgt |
285 |
Q |
| |
|
|| |||| |||| | ||||||||||| ||||| |||||||| |||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
7566728 |
cagaggccatattaatactgttggatattcatatgcatattgggcaagtgatgtgaatgtaagaagatctacttcagattattgt |
7566644 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 356
Target Start/End: Complemental strand, 23298869 - 23298610
Alignment:
| Q |
97 |
tgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtcacctgaaaaaagacttgtt |
196 |
Q |
| |
|
||||| |||||||||| | |||| ||||| ||||||||||||||| |||||||||||||| |||||||||||| || ||||| ||| | ||||| |
|
|
| T |
23298869 |
tgttgcgagtcaatttctaaactgggcttgtaatagccattggaatgcagtggttcggatcttaaggtatattaaaaggccacctaggaaatggtttgtt |
23298770 |
T |
 |
| Q |
197 |
tattca----gaggacataccaatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaa |
292 |
Q |
| |
|
||| || |||| ||| ||||||| |||||||||||||| |||||||||||||||| | |||| ||| |||| | | |||||||| |||||| |
|
|
| T |
23298769 |
tatacagaatgaggtaatagcaatattgttggatattcagataataattgggcaggtgatgtaagtgat--aag-tctattacatgttattgtattctaa |
23298673 |
T |
 |
| Q |
293 |
tgggaggaaacttaatttcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagtactga |
356 |
Q |
| |
|
| || | || ||||||||||||||||| || ||||||| ||||||| ||||||| ||| |||| |
|
|
| T |
23298672 |
ttaga-gcaatttaatttcatggaaaagcaagaagcaaattgttgttacaaggtcgagtgctga |
23298610 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 648
Target Start/End: Complemental strand, 23298510 - 23298388
Alignment:
| Q |
526 |
ttgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccact |
625 |
Q |
| |
|
|||||| ||||||||||||||| || || ||| |||||||||||||||||||| ||||||||||| | ||| | || ||||||| |||||| | || |
|
|
| T |
23298510 |
ttgattttcactttatcagagaaaatatcatttgaggcatcattaaaacctcttcattgagctccaataaccagttcgccaatatcttcaccaaatctct |
23298411 |
T |
 |
| Q |
626 |
acggggacctcagattgattata |
648 |
Q |
| |
|
|| ||||||||| ||| |||||| |
|
|
| T |
23298410 |
acagggacctcaaattaattata |
23298388 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 221 - 368
Target Start/End: Original strand, 50962527 - 50962674
Alignment:
| Q |
221 |
ttggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaatttcatggaaaag |
320 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||| | ||||||| | ||||||| ||||||||| || | |||| ||||| | ||||||||||| || |
|
|
| T |
50962527 |
ttgggtattcagatgccgattgggcaggagatgcaagtgatagacggtctacttctggttattgtatttttgtgggtggaaatctcatttcatggaagag |
50962626 |
T |
 |
| Q |
321 |
taaaaagcaaactgttgttgcaaggtcaagtactgaggcggtgtatcg |
368 |
Q |
| |
|
||||||||||| || ||||| | |||||||| ||||| | |||||| |
|
|
| T |
50962627 |
caaaaagcaaacagtcgttgctcgatcaagtacagaggccgagtatcg |
50962674 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 31838069 - 31838012
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||||| ||||||||| || | |||| ||||||||||||||||||||||| |
|
|
| T |
31838069 |
atatgtgacaagcttgatgcatatgatttgtatgctccagcttgagggggagtgttga |
31838012 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 46593642 - 46593585
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||| |||| |||||||||||||||||| |
|
|
| T |
46593642 |
atatgtgacaagatggatgcatatgatatgtatgctccaccttgagggggagtgttga |
46593585 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 50962935 - 50962992
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||| |||| |||||||||||||||||| |
|
|
| T |
50962935 |
atatgtgacaagatggatgcatatgatatgtatgctccaccttgagggggagtgttga |
50962992 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 647 - 699
Target Start/End: Complemental strand, 23298038 - 23297986
Alignment:
| Q |
647 |
tatatgtaacaagctggatgcatattatatatatggtccagcttgagggggag |
699 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||| |||| |||||||||||| |
|
|
| T |
23298038 |
tatatgtaacaagttggatgcatatgatataaatgctccaacttgagggggag |
23297986 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 705
Target Start/End: Original strand, 37077141 - 37077258
Alignment:
| Q |
588 |
tccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccag |
687 |
Q |
| |
|
||||| ||||| || |||||||||||||| ||| |||||| | |||| ||| ||| |||||| ||||| ||||||||||| || |||| | ||| |
|
|
| T |
37077141 |
tccaaggatcaacttgctgatatctttactaaatttctacggagtcctcggataacttacatatgtgacaagatggatgcatatgatgtatacgcaccac |
37077240 |
T |
 |
| Q |
688 |
cttgagggggagtgttga |
705 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37077241 |
cttgagggggagtgttga |
37077258 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 37495168 - 37495273
Alignment:
| Q |
221 |
ttggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaatttcatggaaaag |
320 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||| || ||||||| | ||||||| ||||||||| || | |||| ||||| | ||||||||||| || |
|
|
| T |
37495168 |
ttgggtattcagatgccgattgggcaggagatgcgagtgatagacggtctacttctggttattgtatttttgtgggtggaaatctcatttcatggaagag |
37495267 |
T |
 |
| Q |
321 |
taaaaa |
326 |
Q |
| |
|
||||| |
|
|
| T |
37495268 |
caaaaa |
37495273 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 37495600 - 37495657
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||| ||||||||||| || | |||| |||| |||||||||||||||||| |
|
|
| T |
37495600 |
atatgtgacaagatggatgcatatgatttgtatgctccaccttgagggggagtgttga |
37495657 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 37000428 - 37000825
Alignment:
| Q |
1 |
caaggagatttgtatcctgacccaggcagatacagaaggttggttaggaagctgaattatcgtactatgac--gaccagatatttcgtttgttgttagtg |
98 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||| |||| ||| ||| ||| ||||||| | |||||| || || |||||||||||||| |||||| |
|
|
| T |
37000428 |
caaggagatttgtatcctaacccaagaagatacaggaggtaagttgggaggctaaattatctcaatatgactagagcatatatttcgtttgtttttagtg |
37000527 |
T |
 |
| Q |
99 |
ttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtcacctgaaaaaagacttgttta |
198 |
Q |
| |
|
||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
37000528 |
ttg--agtcaattttttatctcaccttgtgatagccattggaatgctgtggttcggatcttgcggtatattaaagggtcgcctgaaaaaggacttgttta |
37000625 |
T |
 |
| Q |
199 |
ttcaga----ggacataccaatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatg |
294 |
Q |
| |
|
|||||| || |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
37000626 |
ttcagacagaggccataccaatattgttggatattcagatgcaaattgggcaggtgatgtgaatgatagaagatccacttc--gttattgtgttctaatg |
37000723 |
T |
 |
| Q |
295 |
ggaggaaacttaatttcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagtactgaggcggtgtatcgtgttatgacacatgctacttgtgaac |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||| |||||||||||||| |
|
|
| T |
37000724 |
ggaggaaacttaatttcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagtacagaggcggagtatcgtgctatggcacttgctacttgtgaac |
37000823 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 474 - 723
Target Start/End: Original strand, 37000848 - 37001086
Alignment:
| Q |
474 |
ttgtatctttcgtcaaatccagttttttatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaaa |
573 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
37000848 |
ttgtatcttacgtcaaatccaatttttcatgagaggacaaaacaca--gaagttgattgtcgatttatcagagagaagataatttccggcatcattaaaa |
37000945 |
T |
 |
| Q |
574 |
cctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatta |
673 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37000946 |
cctcttcagtgagctccaatgattagctagccgatatctttaccaaacctctacggggacctcagattgattacatatgtaacaagctggatg------- |
37001038 |
T |
 |
| Q |
674 |
tatatatggtccagcttgagggggagtgttgattattctctatttattat |
723 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37001039 |
--tatatgctccagcttgagggggagtgttgattattctctatttattat |
37001086 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 43737175 - 43737232
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||| |||| |||||||||||||||||| |
|
|
| T |
43737175 |
atatgtgacaagatggatgcatatgatatgtatgctccaccttgagggggagtgttga |
43737232 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 705
Target Start/End: Complemental strand, 8476047 - 8475932
Alignment:
| Q |
589 |
ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagc |
688 |
Q |
| |
|
|||| ||||| || |||||||||||||| ||| | |||||| |||| || | |||| |||||| ||||| ||||||||||| || |||||| ||| | |
|
|
| T |
8476047 |
ccaaggatcaactcgctgatatctttactaaatctctacggattcctc-gaataattacatatgtgacaagatggatgcatatgatgtatatgcaccacc |
8475949 |
T |
 |
| Q |
689 |
ttgagggggagtgttga |
705 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8475948 |
ttgagggggagtgttga |
8475932 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 341
Target Start/End: Original strand, 43736784 - 43736904
Alignment:
| Q |
221 |
ttggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaatttcatggaaaag |
320 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||| || ||||||| | ||||||| |||||||| || | |||| ||||| | ||||||||||| || |
|
|
| T |
43736784 |
ttgggtattcagatgccgattgggcaggagatgcgagtgatagacggtctacttctagttattgtatttttgtgggtggaaatctcatttcatggaagag |
43736883 |
T |
 |
| Q |
321 |
taaaaagcaaactgttgttgc |
341 |
Q |
| |
|
||||||||||| || ||||| |
|
|
| T |
43736884 |
caaaaagcaaacagtcgttgc |
43736904 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 431 - 720
Target Start/End: Original strand, 37624863 - 37625155
Alignment:
| Q |
431 |
tttgtgaactaggtcctatggaacttaagtgtgataatc----ggcattgtatctttcgtcaaatccagttttttatgagaggacaaaacacatagaagt |
526 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| ||||||| || |||| ||||||||||||||| ||| |||||| |||||||||||||| |
|
|
| T |
37624863 |
tttgtgaattaggtcctatggaacttaaatgtgataatcagtcggcattgcat-tttcatcaaatccagtttttcatgggaggactaaacacatagaagt |
37624961 |
T |
 |
| Q |
527 |
tgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccacta |
626 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||| ||||||||||||||||| || |||||||||||||| || | |||||||| || ||| | ||| |
|
|
| T |
37624962 |
tgattgtcactttatcagaaagaaggtcctttccgacatcattaaaacctcttttgtaagctccaatgatcacttatccgatatcttcactaaaactcta |
37625061 |
T |
 |
| Q |
627 |
cggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttgattattctctatttat |
720 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || |||||||| ||||||||| ||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
37625062 |
cggggaccttagattgattatatatgtaacaagttgaatgcatatgatatatatgctcctacttgagggagagtgttgattattctctatttat |
37625155 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 8984416 - 8984707
Alignment:
| Q |
12 |
gtatcctgaccca-ggcagatacagaaggttggttaggaagctgaattatcgtactatgac--gaccagatatttcgtttgttgttagtgttgtgagtca |
108 |
Q |
| |
|
||||||||||||| |||| |||||| |||||| || ||| ||||||||||| |||||||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
8984416 |
gtatcctgacccaaggcacatacaggaggttgattgggaggctgaattatctcactatgactagaccagatatttcgtttgatggtagtgttgtgagtca |
8984515 |
T |
 |
| Q |
109 |
atttttgaactcaccttgtgatagccattggaatgtc---gtggttcggatcttgaggtatattaaagggtcacctgaaaaaa-gacttgtttatt---- |
200 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| |||||||| ||| || ||||| |
|
|
| T |
8984516 |
acttctgaactcaccttgtgatagccattggaatgtcgtggtggttaggatcttgagatat-gtaaagggtcacttgaaaaaaggacctgcttattcaga |
8984614 |
T |
 |
| Q |
201 |
cagaggacataccaatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaat |
293 |
Q |
| |
|
|||||| |||| ||||| | ||||||||||| ||||| |||||||| |||||||||||| ||||||||||||| || ||||||| ||||||| |
|
|
| T |
8984615 |
cagaggccatatcaatactgttggatattcatatgcatattgggcaagtgatgtgaatgtaagaagatctacttcagattattgttttctaat |
8984707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 705
Target Start/End: Complemental strand, 45182453 - 45182237
Alignment:
| Q |
489 |
aatccagttttttatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagct |
588 |
Q |
| |
|
|||||||||||| | ||||||||||| || || |||||||| ||||||||| | ||||||||||| | | | ||||| | |||||| || || | |
|
|
| T |
45182453 |
aatccagtttttcacgagaggacaaagcatattgaagttgactgtcactttcttagagagaagattatcaccggaatcatcagaacctcgtctgtcaatg |
45182354 |
T |
 |
| Q |
589 |
ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagc |
688 |
Q |
| |
|
|||| ||||| || | |||||||||||| ||| | |||||| | |||||||| ||| |||||| ||||| ||||||||||| || |||| | ||| | |
|
|
| T |
45182353 |
ccaaggatcaacttgttgatatctttactaaatctctacggagtcctcagataacttacatatgtgacaagatggatgcatatgatgtatacgcaccacc |
45182254 |
T |
 |
| Q |
689 |
ttgagggggagtgttga |
705 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
45182253 |
ttgagggggagtgttga |
45182237 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 706
Target Start/End: Complemental strand, 44263229 - 44263129
Alignment:
| Q |
606 |
gatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
||||||||||| ||| | ||||| | |||||||| ||| |||||| ||||| ||||||||||| |||| |||| |||| |||||||||||||||||| |
|
|
| T |
44263229 |
gatatctttactaaatctctacgaagtcctcagataacttacatatgtgacaagatggatgcatatgatatctatgctccaccttgagggggagtgttga |
44263130 |
T |
 |
| Q |
706 |
t |
706 |
Q |
| |
|
| |
|
|
| T |
44263129 |
t |
44263129 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 22120196 - 22120292
Alignment:
| Q |
221 |
ttggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaatttcatggaa |
317 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| ||||||| | |||||| ||||||||| || | |||| ||||| | ||||||||||| |
|
|
| T |
22120196 |
ttgggtattcagatgccgattgggcaggtgatgtgagtgatagatggtctactcctggttattgtatttttgtgggtggaaatctcatttcatggaa |
22120292 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 40542803 - 40542707
Alignment:
| Q |
221 |
ttggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaatttcatggaa |
317 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| ||||||| | |||||| ||||||||| || | |||| ||||| | ||||||||||| |
|
|
| T |
40542803 |
ttgggtattcagatgccgattgggcaggtgatgtgagtgatagatggtctactcctggttattgtatttttgtgggtggaaatctcatttcatggaa |
40542707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 553
Target Start/End: Complemental strand, 42357294 - 42357230
Alignment:
| Q |
489 |
aatccagttttttatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagat |
553 |
Q |
| |
|
|||||||||||| | ||||||||||| || || |||||||| ||||||||| | ||||||||||| |
|
|
| T |
42357294 |
aatccagtttttcacgagaggacaaagcatattgaagttgactgtcactttcttagagagaagat |
42357230 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 13 - 724
Target Start/End: Complemental strand, 32331630 - 32330937
Alignment:
| Q |
13 |
tatcctgacccaggcagatacagaaggttggttaggaagctgaattatcgtactatgac--gaccagatatttcgtttgttgttagtgttgtgagtcaat |
110 |
Q |
| |
|
|||||| ||| ||||||||| | ||||| ||| |||| | |||||||| ||||||||| |||| ||||||||||| |||| ||||||||| || || |
|
|
| T |
32331630 |
tatcctaacctaggcagatagatgaggttagttgggaaaccgaattatcttactatgaccagaccgtatatttcgttttctgttggtgttgtgaatctat |
32331531 |
T |
 |
| Q |
111 |
ttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtcacctgaaaaaagacttgtttatt----cagagg |
206 |
Q |
| |
|
|| | ||||||||||||||||| ||||||||||||||||||||| | |||||| || ||| |||||||||||| |||||| |
|
|
| T |
32331530 |
ttataaactcaccttgtgatagtaattggaatgtcgtggttcgga----------------aaggtcacttgggaaatgacttgtttatttcgacagagg |
32331447 |
T |
 |
| Q |
207 |
acataccaatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaactta |
306 |
Q |
| |
|
|||||||| ||| ||| ||||||| |||||||||||| || |||||| | |||||||||||| || | | |||||||| || | || |||||||||||| |
|
|
| T |
32331446 |
ccataccaacattgttgtatattcaaatgcagattgggaagatgatgttattgatagaagatcaacatcaagttattgtattttgattggaggaaactta |
32331347 |
T |
 |
| Q |
307 |
atttcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagtactgaggcggtgtatcgtgttatgacacatgctacttgtgaacttgtatggatga |
406 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||| |||| | | |||| |||||||| ||||| ||| |
|
|
| T |
32331346 |
atctcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagtacagagatagagtagtgtgctatgtcctacactaccagtgaacttttatggttga |
32331247 |
T |
 |
| Q |
407 |
agcacttgttggaagagttgaaattttgtgaactaggtcctatggaacttaagtgtgat----aatcggcattgtatctttcgtcaaatccagtttttta |
502 |
Q |
| |
|
| | || || ||||||||||||||| ||| || || ||||||||||||| || |||| ||||| |||| |||||||| |||||| |||||| | |
|
|
| T |
32331246 |
actatttattacaagagttgaaattttatgagcttggccctatggaacttatgtttgataatgaatcgacattttatctttctataaatcctgtttttca |
32331147 |
T |
 |
| Q |
503 |
tgagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagctccaatgatcagcta |
602 |
Q |
| |
|
||||||| || | |||||||||||| ||| |||||| | | ||||||| |||||| |||||||||||||| |||| ||||||| ||| |||| || |
|
|
| T |
32331146 |
agagaggatttaagaaatagaagttgatcgtctctttatgacaaagaagatcctttctgacatcattaaaaccttttcaatgagctcaaataatcaatta |
32331047 |
T |
 |
| Q |
603 |
gctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgt |
702 |
Q |
| |
|
|| |||||||| |||||||| ||||| ||||||||| | |||||||||||||||| ||||||| ||| ||||||||| |||||||||| |
|
|
| T |
32331046 |
gccgatatcttcaccaaacctctacgtggacctcag-gtaattatatatgtaacaaattggatgc-----------atgctccagcttgcgggggagtgt |
32330959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 208 - 593
Target Start/End: Original strand, 4490183 - 4490562
Alignment:
| Q |
208 |
cataccaatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaa |
307 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||||||||||| ||||||||||||| || |||| |||||||||| || | ||| ||||| | || |
|
|
| T |
4490183 |
catatcaatattgtttaatattcagatgcagattgggcaggta--gtgaatgatagaatgtccacttgaggttattgtttttgagtgg-aggaagttcaa |
4490279 |
T |
 |
| Q |
308 |
tttcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagtactgaggcggtgtatcgtgttatgacacatgctacttgtgaacttgtatggatgaa |
407 |
Q |
| |
|
|| || |||| |||||||||||| | ||||| ||||||||||| ||| |||| || |||||| || ||||||| ||||| ||||| |||| |
|
|
| T |
4490280 |
cttaatataaaactaaaaagcaaaccatcgttgctaggtcaagtacagag------tatcatgatatgacccacactacttgcaaacttttatggttgaa |
4490373 |
T |
 |
| Q |
408 |
gcacttgttggaagagttgaaattttgtgaactaggtcctatggaacttaagtgtgataatcggca----ttgtatctttcgtcaaatccagttttttat |
503 |
Q |
| |
|
||||||| |||||||| | | | |||| |||||||||| ||||||| ||||| | ||| | ||||||| ||| ||| |||| |||||| || |
|
|
| T |
4490374 |
ttacttgttactagagttgacaatatttgaattaggtcctattgaacttatgtgtggttatcagtcgaacttgtatcgttcttcatatcc-gtttttcat |
4490472 |
T |
 |
| Q |
504 |
gagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagctccaat |
593 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
4490473 |
gagaggactaaacacatagaagttgattgtcactttatcagagagaagatcatttctagcatcattaaaacctctccggtgagctccaat |
4490562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 21715 - 21772
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||| |||| |||||||||||||||||| |
|
|
| T |
21715 |
atatgtgacaagatggatgcatatgatatgtatgctccaccttgagggggagtgttga |
21772 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 715
Target Start/End: Complemental strand, 35702192 - 35702074
Alignment:
| Q |
595 |
atcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagcttgagg |
694 |
Q |
| |
|
||||| |||| | |||||| | |||||| ||| |||||||| |||||| |||||||| ||| |||||| ||||||| ||| ||| | |||| ||||||| |
|
|
| T |
35702192 |
atcagttagccggtatcttcatcaaacctctatggggaccttagattggttatatatttaaaaagctgaatgcatagtatgtat--gctccatcttgagg |
35702095 |
T |
 |
| Q |
695 |
gggagtgttgattattctcta |
715 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
35702094 |
gggatctttgattattctcta |
35702074 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 30591737 - 30591680
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||||| ||||||||| || | |||| |||||||||| |||||||||||| |
|
|
| T |
30591737 |
atatgtgacaagcttgatgcatatgatttgtatgctccagcttgaaggggagtgttga |
30591680 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 419 - 658
Target Start/End: Complemental strand, 703726 - 703488
Alignment:
| Q |
419 |
aagagttgaaattttgtgaactaggtcctatggaacttaagtgtgataatc----ggcattgtatctttcgtcaaatccagttttttatgagaggacaaa |
514 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||| || |||| |||||| |||||||| ||||| || |||||| |||||| || | |
|
|
| T |
703726 |
aagagttgaaattttttgaactaggtcctatggaacttatgtgcgacaatcagtcggcattttatctttcttcaaaccccgtttttcatgaga--actga |
703629 |
T |
 |
| Q |
515 |
acacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatcttt |
614 |
Q |
| |
|
|||| | |||| ||| |||| |||| ||||||||| |||||||||||| |||||||||||| |||||||||||| ||||| | ||| ||||||| |
|
|
| T |
703628 |
tcacaaaagagttaatttccact--atcaaagagaagatcatttctagcatcactaaaacctcttc-gtgagctccaataatcagttggctaatatcttc |
703532 |
T |
 |
| Q |
615 |
accaaaccactacggggacctcagattgattatatatgtaacaa |
658 |
Q |
| |
|
|||||| | ||| | |||||| ||||||||||||||||||||| |
|
|
| T |
703531 |
accaaatccctatgaggacctgggattgattatatatgtaacaa |
703488 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 497 - 705
Target Start/End: Complemental strand, 10434663 - 10434455
Alignment:
| Q |
497 |
tttttatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagctccaatgat |
596 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||| | ||||| |||||| ||||||||||| || ||| || |
|
|
| T |
10434663 |
ttttcatgagaggactaaacacagagaagttaattgtcactttatcagagagaagatcctttcgaacatcactaaaacatcttcagtgagttctaataat |
10434564 |
T |
 |
| Q |
597 |
cagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagcttgagggg |
696 |
Q |
| |
|
|| |||| ||||||| | ||||| |||| ||||||| |||||||||||||| |||||| ||||||||| || ||||| | || ||||||| |
|
|
| T |
10434563 |
tagttagccaatatcttcattaaacctctacagggaccttgacttgattatatatgtttcaagctagatgcatatgatggatatgcttcaatttgaggga |
10434464 |
T |
 |
| Q |
697 |
gagtgttga |
705 |
Q |
| |
|
||||||||| |
|
|
| T |
10434463 |
gagtgttga |
10434455 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 17727045 - 17727102
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||||| ||||||||| || | |||| ||||||||||||||||||||||| |
|
|
| T |
17727045 |
atatgtgacaagcttgatgcatatgatttgtatgctccagcttgagggggagtgttga |
17727102 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 38506531 - 38506588
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||| |||| |||||||||||||||||| |
|
|
| T |
38506531 |
atatgtgacaagatggatgcatatgatatgtatgctccaccttgagggggagtgttga |
38506588 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 341
Target Start/End: Complemental strand, 34768570 - 34768450
Alignment:
| Q |
221 |
ttggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaatttcatggaaaag |
320 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||| || ||||||| | ||||||| |||||||| || | |||| ||||| | ||||||||||| || |
|
|
| T |
34768570 |
ttgggtattcagatgccgattgggcaggagatgcgagtgatagacggtctacttcttgttattgtatttttgtgggtggaaatctcatttcatggaagag |
34768471 |
T |
 |
| Q |
321 |
taaaaagcaaactgttgttgc |
341 |
Q |
| |
|
||||||||||| || ||||| |
|
|
| T |
34768470 |
caaaaagcaaacagtcgttgc |
34768450 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 341
Target Start/End: Original strand, 38506100 - 38506220
Alignment:
| Q |
221 |
ttggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaatttcatggaaaag |
320 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||| || ||||||| | ||||||| |||||||| || | |||| ||||| | ||||||||||| || |
|
|
| T |
38506100 |
ttgggtattcagatgccgattgggcaggagatgcgagtgatagacggtctacttctagttattgtatttttgtgggtggaaatctcatttcatggaagag |
38506199 |
T |
 |
| Q |
321 |
taaaaagcaaactgttgttgc |
341 |
Q |
| |
|
||||||||||| || ||||| |
|
|
| T |
38506200 |
caaaaagcaaacagtcgttgc |
38506220 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 17726673 - 17726744
Alignment:
| Q |
280 |
tattgtgttctaatgggaggaaacttaatttcatggaaaagtaaaaagcaaactgttgttgcaaggtcaagt |
351 |
Q |
| |
|
||||||||||| || ||||| || || ||||||||||||||||| ||||||| ||| ||||| || |||||| |
|
|
| T |
17726673 |
tattgtgttctcattggaggcaatttgatttcatggaaaagtaagaagcaaaatgtcgttgctagatcaagt |
17726744 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 96 - 320
Target Start/End: Complemental strand, 49812955 - 49812730
Alignment:
| Q |
96 |
gtgttgtgagtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtcacctgaaaaaagacttgt |
195 |
Q |
| |
|
|||||| ||||||||| || ||||| ||||| |||||||||| || | ||||||||||||||||| ||||||||| |||||||| ||||| ||||| |
|
|
| T |
49812955 |
gtgttgagagtcaattgttaaactcgacttgttatagccattgaaacgcagtggttcggatcttgagttatattaaaaggtcacctaggaaaaggcttgt |
49812856 |
T |
 |
| Q |
196 |
ttattcagag-gacataccaatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatg |
294 |
Q |
| |
|
|| | || | | | | |||||||| ||||||||||| || |||||||||||||||||| | ||||| |||||| |||| |||||| |||||| | || |
|
|
| T |
49812855 |
ttgtacaaatagtcgtgccaatattgttggatattcatatatagattgggcaggtgatgtaagtgataaaagatcaacttcaggttactgtgttttgatt |
49812756 |
T |
 |
| Q |
295 |
ggaggaaacttaatttcatggaaaag |
320 |
Q |
| |
|
|| ||||| |||||||||| |||||| |
|
|
| T |
49812755 |
ggtggaaatttaatttcattgaaaag |
49812730 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 705
Target Start/End: Original strand, 36500842 - 36501058
Alignment:
| Q |
489 |
aatccagttttttatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagct |
588 |
Q |
| |
|
|||||||||||| | ||||||||||| || || |||||||| ||||||||| | ||||||||||| | | | ||||| | |||||| | || | | |
|
|
| T |
36500842 |
aatccagtttttcacgagaggacaaagcatattgaagttgactgtcactttcttagagagaagattatcaccggaatcatcagaacctcatttgtcaatt |
36500941 |
T |
 |
| Q |
589 |
ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagc |
688 |
Q |
| |
|
|||| ||||| || |||||||||||||| ||| | |||||| | |||| ||| ||| |||||| ||||| ||||||||||| || |||| | ||| | |
|
|
| T |
36500942 |
ccaaggatcaacttgctgatatctttactaaatctctacggagtcctcggataacttacatatgtgacaagatggatgcatatgatgtatacgcaccacc |
36501041 |
T |
 |
| Q |
689 |
ttgagggggagtgttga |
705 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36501042 |
ttgagggggagtgttga |
36501058 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 35001007 - 35000925
Alignment:
| Q |
104 |
agtcaatttttgaactcaccttgtgatagccattggaatgtcgtggttcggatcttgaggtatattaaagggtcacctgaaaa |
186 |
Q |
| |
|
||||||||| | ||||||||||||||| || ||||||||| || |||| ||||| |||||||| ||||||||| ||| |||| |
|
|
| T |
35001007 |
agtcaatttcttaactcaccttgtgatggcaattggaatgaagtagttcagatctagaggtatactaaagggtcgcctaaaaa |
35000925 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 12932468 - 12932411
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| || | |||| |||||||||||||||||| |
|
|
| T |
12932468 |
atatgtgacaagatggatgcatatgatatgtacgctccaccttgagggggagtgttga |
12932411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 15424595 - 15424538
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||| | ||||||||||| |||| |||| |||| |||||||||||||||||| |
|
|
| T |
15424595 |
atatgtgacatgatggatgcatatgatatgtatgctccaccttgagggggagtgttga |
15424538 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 629 - 724
Target Start/End: Complemental strand, 1217660 - 1217561
Alignment:
| Q |
629 |
gggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagcttgag----ggggagtgttgattattctctatttattata |
724 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
1217660 |
gggaccttggattgattatatatgtaacaagttggatgcatatgatatatatgatccagcttgaggcccggggagtgttgattattctctacttattata |
1217561 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 705
Target Start/End: Original strand, 10127 - 10343
Alignment:
| Q |
489 |
aatccagttttttatgagaggacaaaacacatagaagttgattgtcactttatcagagagaagatactttctagcatcattaaaacctcttcagtgagct |
588 |
Q |
| |
|
|||||||| ||| ||||||||||||| || |||||||||||||||||| || | | ||||||||| | | | ||||||| |||||| | || | | |
|
|
| T |
10127 |
aatccagtctttcatgagaggacaaagcatatagaagttgattgtcacgttcttatagagaagattatcaccggaatcattagaacctcctttgtcaatt |
10226 |
T |
 |
| Q |
589 |
ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatattatatatatggtccagc |
688 |
Q |
| |
|
|||| ||||| || |||||||||||||| || | ||||| | |||||||| ||| |||||| ||||| ||||||| ||| || |||||| ||| | |
|
|
| T |
10227 |
ccaaggatcaacttgctgatatctttactgaatctctacgaagtcctcagataacttacatatgtgacaagatggatgcctatgatgtatatgcaccacc |
10326 |
T |
 |
| Q |
689 |
ttgagggggagtgttga |
705 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10327 |
ttgagggggagtgttga |
10343 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 340
Target Start/End: Original strand, 9848 - 9974
Alignment:
| Q |
214 |
aatattattggatattcagatgcagattgggcaggtgatgtgaatgatagaagatctactttaggttattgtgttctaatgggaggaaacttaatttcat |
313 |
Q |
| |
|
||||| |||||||||||||| | ||||| ||||| ||| | ||||||| ||||||| | ||||||||||||| | || || ||||| || || ||| |
|
|
| T |
9848 |
aatatcattggatattcagactctgattgagcaggagatactagtgatagatgatctacatcaggttattgtgttttcattggtggaaatttgatcacat |
9947 |
T |
 |
| Q |
314 |
ggaaaagtaaaaagcaaactgttgttg |
340 |
Q |
| |
|
|||| || ||||||||||||||||||| |
|
|
| T |
9948 |
ggaatagcaaaaagcaaactgttgttg |
9974 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0744 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0744
Description:
Target: scaffold0744; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 6510 - 6453
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||| |||| |||| ||||||||||||| |
|
|
| T |
6510 |
atatgtgacaagatggatgcatatgatatgtatgctccaccttgcgggggagtgttga |
6453 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 37643 - 37700
Alignment:
| Q |
648 |
atatgtaacaagctggatgcatattatatatatggtccagcttgagggggagtgttga |
705 |
Q |
| |
|
|||||| ||| | ||||||||||| |||| |||| |||| |||||||||||||||||| |
|
|
| T |
37643 |
atatgtgacatgatggatgcatatgatatgtatgctccaccttgagggggagtgttga |
37700 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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