View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12961_low_13 (Length: 210)
Name: NF12961_low_13
Description: NF12961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12961_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 39185004 - 39185182
Alignment:
| Q |
13 |
aaaatcaccaaaaccagtaccaaacctgaaagcatgtgagacacccagagnnnnnnngtcgatatatacccaaaaccgccaaaa---aaccaagcaacca |
109 |
Q |
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| T |
39185004 |
aaaatcaccaaaaccagtaccgaacgtgaaagcacgtgagacacccagagaaaaaa-gtcgatatatacctaaaaccacaaaaaaaaaaccaagcaacca |
39185102 |
T |
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| Q |
110 |
gcaccactacccaccgtgtatggccgtcggaaagctggtgacaacaccaccaaacagtaacacaaaaacttaaacaaccc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39185103 |
gcaccactacccaccgtgtatggccgtcggaaagctggtgacaacaccaccaaacagtaacacaaaaacttaaacaaccc |
39185182 |
T |
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