View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12961_low_14 (Length: 203)
Name: NF12961_low_14
Description: NF12961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12961_low_14 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 21640 - 21719
Alignment:
| Q |
74 |
aatagtcgtcgtgaacttaactcagttaatggaaataatacatggtatatgcaaggtctgaggtttgaactctagacacc |
153 |
Q |
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| T |
21640 |
aatagtcgtcgtgagcttaactcagttaatggagataatatatagtatatgcaaggtctgaggtttgaactctagacacc |
21719 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 26886427 - 26886372
Alignment:
| Q |
83 |
cgtgaacttaactcagttaatggaaataatacatggtatatgcaaggtctgaggtt |
138 |
Q |
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| T |
26886427 |
cgtgaacttaactcagttgatgggaataatacataatatatacaaggtatgaggtt |
26886372 |
T |
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