View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12961_low_3 (Length: 568)
Name: NF12961_low_3
Description: NF12961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12961_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 14 - 551
Target Start/End: Complemental strand, 53478490 - 53477954
Alignment:
| Q |
14 |
catcatcctttgagaagtgggattcaaatccatttaatatcatcaattacttcatgattgaattcaactaacttgtggttaacacatatagagaacctac |
113 |
Q |
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| T |
53478490 |
catcatcctttgagaagtgggattcaaatccatttaatatcatcaattacttcatgattgaattcaactaacttggggttaatacatatagagaacctac |
53478391 |
T |
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| Q |
114 |
ttggtacgtcacaattgaagagtctcacatggtgacttaatattcaacaaaaatgtttcattgattgataactcttcacatatgtaggttttcaacgtct |
213 |
Q |
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| T |
53478390 |
ttggtacgtcacaattgaagagtctcacatggtgacttaatattcaacaaaaatgtttcattgattgataactcttc-catatgtaggttttcaacgtct |
53478292 |
T |
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| Q |
214 |
taattttgaggtcattatttgtgttacgctatcatatgttttagttaaacttggaatcatttgaataaaattgtggtcttgtaattctttattcaattcg |
313 |
Q |
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| T |
53478291 |
taattttgaggtcattatttgtgttaagctatcatatgttttagttaaacttggaatcatttgaataaaattgtggtcttgtaattctttattcaattcg |
53478192 |
T |
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| Q |
314 |
gtatttttctttcaatttctccctaacgagacaattcttataatgttatttttcttcatgcgtttaactaagtggattgatcgtgagaagtggaagacat |
413 |
Q |
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| T |
53478191 |
gtatttttctttcaatttctccctaacgagacaattcttataatgttatttttcttcatgcgtttaactaagtggattgatcgtgagaagtggaagacgt |
53478092 |
T |
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| Q |
414 |
tcctacggaaattactgaataagtcattgatgtaaaacataatgatagaagcatgtcaaactacacttgaaaaactctaattctgtctaatcacacctac |
513 |
Q |
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| T |
53478091 |
tcctacgaaaatcactgaataagtcattgatgtaaaacataatgatagaagcatgtcaaactacacttgaaaaactctaattctgtctaatcacacctac |
53477992 |
T |
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| Q |
514 |
aaattgtaagtgcaacccaagcataattaacgtgaaga |
551 |
Q |
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| T |
53477991 |
aaattgtaagtgcaacccaagcataattaacgtgaaga |
53477954 |
T |
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