View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12961_low_6 (Length: 331)
Name: NF12961_low_6
Description: NF12961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12961_low_6 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 26357 - 26050
Alignment:
| Q |
7 |
ctacctatcttcctggtcagactagattttaaattaagtaatgacctgttgagattatattttagggtaagcttggtggtcaagaaattgcagtaaagag |
106 |
Q |
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| T |
26357 |
ctacctatcttcctggtcagactagattttaaattaagtaatgacctattgagattatattttagggtaagcttggtggtcaagaaattgcagtaaagag |
26258 |
T |
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| Q |
107 |
actttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaacatcgaaaccttgttaaattacgtggctac |
206 |
Q |
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| T |
26257 |
actttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaacatcgaaaccttgttaaattacggggctac |
26158 |
T |
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| Q |
207 |
tgcgtaaaaggagaggaaaaaattctgctttatgagtatatgcctaacaagagcctggacttaatgatattcggttggtcttaaattttatctatcattt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26157 |
tgcgtaaaaggagaggaaaaaattctgctttatgagtatatgcctaacaagagcctggacttaatgatattcggttggtctcaaattttatctatcattt |
26058 |
T |
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| Q |
307 |
gtggtgtt |
314 |
Q |
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|||||||| |
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| T |
26057 |
gtggtgtt |
26050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 165 - 314
Target Start/End: Complemental strand, 21918349 - 21918197
Alignment:
| Q |
165 |
gctaaacttcaacatcgaaaccttgttaaattacgtggctactgc---gtaaaaggagaggaaaaaattctgctttatgagtatatgcctaacaagagcc |
261 |
Q |
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| T |
21918349 |
gctaaacttcaacatcgtaaccttgttaaattacgcggctgctcctgtgtaaaaggagaggaaaaagttctgctttatgagtatatgcgtaacaagagct |
21918250 |
T |
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| Q |
262 |
tggacttaatgatattcggttggtcttaaattttatctatcatttgtggtgtt |
314 |
Q |
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| T |
21918249 |
tggacttattgatattcggttggtctctaattttatctatcatttgtggtgtt |
21918197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 21925427 - 21925330
Alignment:
| Q |
66 |
ttttagggtaagcttggtggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgat |
163 |
Q |
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| T |
21925427 |
ttttagggtaaatttggtggtcaagaaattgcgataaagagactctcaagtgtttcatcacaaggttcactggaattcaagaatgaggttgttttgat |
21925330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 21935984 - 21936088
Alignment:
| Q |
81 |
ggtggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaacatc |
180 |
Q |
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||||| ||||||||||||||||| |||||||||| | ||| |||||| | |||| ||||||||||| ||||||||||| || ||||||||||||| |
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| T |
21935984 |
ggtggacaagaaattgcagtaaaaagactttcaagttgttctggacaaggtatggaggagtttaagaatgaagttgttttgatcgcgaaacttcaacatc |
21936083 |
T |
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| Q |
181 |
gaaac |
185 |
Q |
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||||| |
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| T |
21936084 |
gaaac |
21936088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 266
Target Start/End: Complemental strand, 37714322 - 37714140
Alignment:
| Q |
84 |
ggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaacatcgaa |
183 |
Q |
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| T |
37714322 |
ggtcaagagattgctatcaagaggctttcgagtgtttcaactcaaggcttgcaagaatttaaaaatgagattgttttgattgccaaacttcaacatcgaa |
37714223 |
T |
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| Q |
184 |
accttgttaaattacgtggctactgcgtaaaaggagaggaaaaaattctgctttatgagtatatgcctaacaagagcctggac |
266 |
Q |
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| T |
37714222 |
atcttgttaggcttaggggctattgcattaaaggagacgaaaaaatcctactgtatgaatacatgtcaaacaagagcttggac |
37714140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 36438241 - 36438153
Alignment:
| Q |
90 |
gaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaaca |
178 |
Q |
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|||||||||||||||||||| ||||| ||| ||||||| || | || ||||| |||||||||||||||||| | ||||||||||| |
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| T |
36438241 |
gaaattgcagtaaagagactgtcaaagcattccggacaaggcatagaagagtttaaaaatgaggttgttttgatttcaaaacttcaaca |
36438153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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