View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12961_low_7 (Length: 318)
Name: NF12961_low_7
Description: NF12961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12961_low_7 |
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| [»] scaffold0002 (4 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 404320 - 404266
Alignment:
| Q |
126 |
tatgattattgaatattcaaaacttcaaaaccatagtgtgaatgagtgaatgaac |
180 |
Q |
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| T |
404320 |
tatgattattgaatattcaaaacttcaaaaccatagtgtgaatgagtgaatgaac |
404266 |
T |
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Target: scaffold0002; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 403765 - 403705
Alignment:
| Q |
241 |
tgtcgatccggataaatgtttaacaatgtgtacacaataacaagcggaccatcccaatatt |
301 |
Q |
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| T |
403765 |
tgtcggtccggataaatgtttaacaatgtgtatacaataacaagcggaccatcccaatatt |
403705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 403881 - 403827
Alignment:
| Q |
126 |
tatgattattgaatattcaaaacttcaaaaccatagtgtgaatgagtgaatgaac |
180 |
Q |
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| T |
403881 |
tatgattattgaataatcaaaactccaaaaccatagtgtgaatgagtgaatgaac |
403827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 404191 - 404142
Alignment:
| Q |
249 |
cggataaatgtttaacaatgtgtacacaataacaagcggaccatcccaat |
298 |
Q |
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| T |
404191 |
cggataagtgtttaacgatgtgtacacaataacaagcggaccgtcccaat |
404142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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