View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12962_high_10 (Length: 339)

Name: NF12962_high_10
Description: NF12962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12962_high_10
NF12962_high_10
[»] chr4 (7 HSPs)
chr4 (18-330)||(53622160-53622472)
chr4 (223-279)||(32175493-32175549)
chr4 (136-183)||(31262891-31262938)
chr4 (195-252)||(49622961-49623018)
chr4 (136-170)||(12329267-12329301)
chr4 (195-298)||(35153285-35153389)
chr4 (195-301)||(49421859-49421967)
[»] chr6 (3 HSPs)
chr6 (195-306)||(29716724-29716837)
chr6 (206-300)||(34552289-34552384)
chr6 (195-284)||(23344605-23344694)
[»] chr7 (6 HSPs)
chr7 (136-264)||(44452045-44452173)
chr7 (149-301)||(43492166-43492320)
chr7 (203-271)||(5691414-5691482)
chr7 (123-180)||(22689038-22689095)
chr7 (136-183)||(31498713-31498762)
chr7 (136-183)||(5907798-5907846)
[»] chr1 (9 HSPs)
chr1 (131-279)||(48947172-48947321)
chr1 (226-304)||(4040957-4041036)
chr1 (230-301)||(40286926-40286998)
chr1 (195-261)||(1656470-1656536)
chr1 (228-304)||(38172711-38172788)
chr1 (198-273)||(759221-759296)
chr1 (222-276)||(37188521-37188574)
chr1 (228-270)||(47364041-47364083)
chr1 (130-183)||(34861296-34861351)
[»] chr3 (5 HSPs)
chr3 (195-298)||(24313585-24313689)
chr3 (195-279)||(46725691-46725774)
chr3 (222-270)||(20821364-20821412)
chr3 (228-303)||(48551106-48551181)
chr3 (130-183)||(29611987-29612042)
[»] chr2 (6 HSPs)
chr2 (195-303)||(431596-431706)
chr2 (128-183)||(25622499-25622556)
chr2 (228-298)||(32787550-32787621)
chr2 (196-302)||(12848436-12848543)
chr2 (226-277)||(12205584-12205635)
chr2 (131-183)||(16717579-16717631)
[»] chr5 (3 HSPs)
chr5 (195-278)||(17774272-17774354)
chr5 (30-70)||(5223620-5223660)
chr5 (136-183)||(8200102-8200150)
[»] chr8 (9 HSPs)
chr8 (136-302)||(1876446-1876615)
chr8 (222-304)||(32133657-32133741)
chr8 (222-298)||(34722747-34722823)
chr8 (136-271)||(31844214-31844350)
chr8 (222-299)||(41959950-41960027)
chr8 (196-264)||(1445137-1445205)
chr8 (222-270)||(38047607-38047655)
chr8 (116-183)||(24869367-24869436)
chr8 (127-175)||(7044423-7044471)
[»] scaffold0236 (1 HSPs)
scaffold0236 (228-279)||(19633-19684)
[»] scaffold1681 (1 HSPs)
scaffold1681 (119-183)||(634-699)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 53622160 - 53622472
Alignment:
Q  18 acatgttggcacgataataatttgaaataatgacataatcgaatgcaatcacacttatccgtgttatgtgcgatgtcttacatataattactctcaagtc 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53622160 acatgttgacacgataataatttgaaataatgacataatcgaatgcaatcacacttatcggtgttatgtgcgatgtcttacatataattactctcaagtc 53622259  T
Q  118 tcaattttttaaagggttttgttaacgagtgccccatgcactctttaaacattctaaattaagtaannnnnnnnnnnaaatgtcaaaattttcaatttcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||           |||||||||||||||||||||||    
T  53622260 tcaattttttaaagggttttgttaacgagtgccccatgcactctttaaacatcttaaattaagtaattttttttttaaaatgtcaaaattttcaatttcc 53622359  T
Q  218 agctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggcatagttaacatttccctttctcatcacggtca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53622360 agctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggcatagttaacatttccctttctcatcactgtca 53622459  T
Q  318 acgtgttggtgtc 330  Q
    |||||||||||||    
T  53622460 acgtgttggtgtc 53622472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 32175493 - 32175549
Alignment:
Q  223 actttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgccc 279  Q
    |||||||| |||||| ||||| ||||||||||||||||||||  |||||||||||||    
T  32175493 actttattgcacaaactttcacaaaaagttatcatttaaagtctttaactagtgccc 32175549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 31262891 - 31262938
Alignment:
Q  136 ttgttaacgagtgccccatgcactctttaaacattctaaattaagtaa 183  Q
    ||||||||||||||| | |||||||||||| |||||||||||||||||    
T  31262891 ttgttaacgagtgcctcctgcactctttaagcattctaaattaagtaa 31262938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 49623018 - 49622961
Alignment:
Q  195 aaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagtt 252  Q
    |||||||||||||||||||||| |    ||||||||||||||||||||| ||||||||    
T  49623018 aaatgtcaaaattttcaatttctaatatactttattacacaaattttcacaaaaagtt 49622961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 12329267 - 12329301
Alignment:
Q  136 ttgttaacgagtgccccatgcactctttaaacatt 170  Q
    |||||||||||||||||||||||||||||| ||||    
T  12329267 ttgttaacgagtgccccatgcactctttaagcatt 12329301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 35153285 - 35153389
Alignment:
Q  195 aaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggca-tagttaa 293  Q
    |||||| ||| |||||||||| ||   ||||||||| |||||| ||| | |||||||||  |||||||||  |||  ||||||||||||||| || ||||    
T  35153285 aaatgttaaagttttcaattttcaatgcactttattgcacaaacttttataaaaagttactatttaaagtctttatttagtgcccgggggcactaattaa 35153384  T
Q  294 cattt 298  Q
    |||||    
T  35153385 cattt 35153389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 301
Target Start/End: Complemental strand, 49421967 - 49421859
Alignment:
Q  195 aaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtg-cccgggggca-tagtta 292  Q
    |||||| ||| |||||||||||||   |||||||||  ||||  ||| | |||  ||| ||||||||||| ||||||||||| |||||| ||| ||||||    
T  49421967 aaatgttaaagttttcaatttccaatgcactttattgtacaagcttttataaatcgttgtcatttaaagtccttaactagtgccccgggagcactagtta 49421868  T
Q  293 acatttccc 301  Q
    |||||||||    
T  49421867 acatttccc 49421859  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 306
Target Start/End: Complemental strand, 29716837 - 29716724
Alignment:
Q  195 aaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtg-cccgggggca-tagtta 292  Q
    |||||||||| |||||||||||||   |||||||||||||||| ||||| |||| |||| |||||||||| |||||| |||| |||||||||| ||||||    
T  29716837 aaatgtcaaagttttcaatttccaatgcactttattacacaaactttcataaaaggttaccatttaaagtccttaaccagtgccccgggggcactagtta 29716738  T
Q  293 acatttccctttct 306  Q
    ||||||||||||||    
T  29716737 acatttccctttct 29716724  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 34552384 - 34552289
Alignment:
Q  206 ttttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggca-tagttaacatttcc 300  Q
    |||||||||||||   ||||||||||||||| |||    |||||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||    
T  34552384 ttttcaatttccaatgcactttattacacaactttcataaaaaagttgtcatttaaagtccttaacgagtgcccgggggcactagttaacatttcc 34552289  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 23344605 - 23344694
Alignment:
Q  195 aaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccggggg 284  Q
    |||||||||| | |||||||||||   |||||||||||||||| ||| | ||||||||| |||||||||| | |||| ||||||| ||||    
T  23344605 aaatgtcaaagtgttcaatttccaatgcactttattacacaaacttttataaaaagttaccatttaaagtgcataaccagtgccccgggg 23344694  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 264
Target Start/End: Complemental strand, 44452173 - 44452045
Alignment:
Q  136 ttgttaacgagtgccccatgcactctttaaacattctaaattaagtaannnnnnnnnnnaaatgtcaaaattttcaatttccagctcactttattacaca 235  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||           |||| |||||| ||||||||||||   ||||||||||||||    
T  44452173 ttgttaacgagtgccccagacactctttaaacattctaaattaagtaattattatttaaaaatatcaaaagtttcaatttccaatgcactttattacaca 44452074  T
Q  236 aattttcagaaaaagttatcatttaaagt 264  Q
    || ||||| ||||| |||  |||||||||    
T  44452073 aactttcataaaaaattactatttaaagt 44452045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 301
Target Start/End: Complemental strand, 43492320 - 43492166
Alignment:
Q  149 ccccatgcactctttaaacattctaaattaagtaannnnnnnnnnnaaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaa 248  Q
    |||| |||||||||||| |||||||||||||||||           |||||||||||||| |||||||||   |||||||||||||||| ||| | ||||    
T  43492320 ccccgtgcactctttaagcattctaaattaagtaattattctttagaaatgtcaaaatttacaatttccaatgcactttattacacaaactttaataaaa 43492221  T
Q  249 agttatcatttaaagttcttaactagtg-cccgggggca-tagttaacatttccc 301  Q
    ||||| ||||||||   |||||  |||| ||||| |||| |||||||||||||||    
T  43492220 agttaccatttaaatcccttaatcagtgccccggaggcactagttaacatttccc 43492166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 5691482 - 5691414
Alignment:
Q  203 aaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaac 271  Q
    |||||||||| ||| | || ||||||||||||||| ||||| ||||| || ||||||||| ||||||||    
T  5691482 aaattttcaacttcaaacttactttattacacaaactttcataaaaaattgtcatttaaaattcttaac 5691414  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 22689095 - 22689038
Alignment:
Q  123 tttttaaagggttttgttaacgagtgccccat-gcactctttaaacattctaaattaag 180  Q
    ||||| |||||||||||||||| ||||||| | ||||| ||||||||||||||||||||    
T  22689095 tttttgaagggttttgttaacgtgtgccccgtggcact-tttaaacattctaaattaag 22689038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 31498762 - 31498713
Alignment:
Q  136 ttgttaacgagtgc--cccatgcactctttaaacattctaaattaagtaa 183  Q
    ||||||||||||||  ||  ||||||||||||||||||||||||||||||    
T  31498762 ttgttaacgagtgcttccgttgcactctttaaacattctaaattaagtaa 31498713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 5907798 - 5907846
Alignment:
Q  136 ttgttaacgagtgccccatg-cactctttaaacattctaaattaagtaa 183  Q
    |||||||||||||||| | | |||||||||| |||||||||||||||||    
T  5907798 ttgttaacgagtgccctagggcactctttaagcattctaaattaagtaa 5907846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 279
Target Start/End: Original strand, 48947172 - 48947321
Alignment:
Q  131 gggttttgttaacgagtgccccatg--cactctttaaacattctaaattaagtaannnnnnnnnnnaaatgtcaaaattttcaatttccagctcacttta 228  Q
    ||||||||||||||||||||||  |  || ||||||| ||| |||||||||||||           |||||||||| |||||||||||||   ||||  |    
T  48947172 gggttttgttaacgagtgcccctggggcattctttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaatttccaatgcactg-a 48947270  T
Q  229 ttacacaaattttcagaaaaagttatcatttaaagttcttaactagtgccc 279  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  48947271 ttacacaaattttcataaaaagttaccatttaaagtccttaactagtgccc 48947321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 4040957 - 4041036
Alignment:
Q  226 ttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggca-tagttaacatttcccttt 304  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||||| || | |||| | ||||||||||||||||    
T  4040957 ttattacacaaactttcacaaaaagttatcatttaaagtccttaactagtgtcccgaggcactcgttaacatttcccttt 4041036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 40286926 - 40286998
Alignment:
Q  230 tacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggca-tagttaacatttccc 301  Q
    |||||||| ||| | |||||||||  ||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  40286926 tacacaaacttttataaaaagttactatttaaagttcttaactagtgtccgggggcactagttaatatttccc 40286998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 1656470 - 1656536
Alignment:
Q  195 aaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaa 261  Q
    ||||||||||||||||||||||||   || |||| ||||||| |||||| |||||||||| ||||||    
T  1656470 aaatgtcaaaattttcaatttccaatgcattttaatacacaatttttcataaaaagttattatttaa 1656536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 38172711 - 38172788
Alignment:
Q  228 attacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggca-tagttaacatttcccttt 304  Q
    |||||||||| ||| | |||||||||||||||||||| |||||| |||||||  || || ||||||||| ||||||||    
T  38172711 attacacaaacttttataaaaagttatcatttaaagtccttaacaagtgccctaggccactagttaacacttcccttt 38172788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 759296 - 759221
Alignment:
Q  198 tgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaacta 273  Q
    ||||||| ||| |||||||||   |||||||||||||||| || || ||||  ||| |||||||||||||||||||    
T  759296 tgtcaaagtttccaatttccaatacactttattacacaaacttacataaaagattaccatttaaagttcttaacta 759221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 37188574 - 37188521
Alignment:
Q  222 cactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtg 276  Q
    |||||||||||||||| ||| | |||||||||| ||||||||| |||||||||||    
T  37188574 cactttattacacaaacttttacaaaaagttat-atttaaagtccttaactagtg 37188521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 47364083 - 47364041
Alignment:
Q  228 attacacaaattttcagaaaaagttatcatttaaagttcttaa 270  Q
    |||||||||||||||| ||||| |||||||||||| |||||||    
T  47364083 attacacaaattttcataaaaatttatcatttaaaattcttaa 47364041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 34861351 - 34861296
Alignment:
Q  130 agggttttgttaacgagtgccccatg--cactctttaaacattctaaattaagtaa 183  Q
    ||||| |||||||||||||||||  |  |||||||||| |||||||||||||||||    
T  34861351 agggtcttgttaacgagtgccccgggggcactctttaagcattctaaattaagtaa 34861296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 24313585 - 24313689
Alignment:
Q  195 aaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggca-tagttaa 293  Q
    |||||||||| |||||||||| ||   || |||| |||||||||||||| ||||||||||||||||||||  |||||  |||||| |||||| |||||||    
T  24313585 aaatgtcaaagttttcaattttcaatgcattttactacacaaattttcataaaaagttatcatttaaagtctttaaccggtgccccggggcactagttaa 24313684  T
Q  294 cattt 298  Q
    |||||    
T  24313685 cattt 24313689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 46725691 - 46725774
Alignment:
Q  195 aaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgccc 279  Q
    |||||| |||||||||||||| ||   |||||||||||||||||||| | |||||||| | |||||||||  |||||||||||||    
T  46725691 aaatgttaaaattttcaattttcaatgcactttattacacaaattttta-aaaaagttgttatttaaagtcgttaactagtgccc 46725774  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 20821364 - 20821412
Alignment:
Q  222 cactttattacacaaattttcagaaaaagttatcatttaaagttcttaa 270  Q
    |||||||||||||||| ||||| ||||||||| |||||||||| |||||    
T  20821364 cactttattacacaaactttcataaaaagttaccatttaaagtccttaa 20821412  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 48551106 - 48551181
Alignment:
Q  228 attacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggcatagttaacatttccctt 303  Q
    ||||||||| |||| | |||||||||  |||| | || ||||||||||||||||||   |||||||||||||||||    
T  48551106 attacacaattttttataaaaagttactatttgaggtccttaactagtgcccggggcactagttaacatttccctt 48551181  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 29611987 - 29612042
Alignment:
Q  130 agggttttgttaacgagtgccccatg--cactctttaaacattctaaattaagtaa 183  Q
    ||||| |||||||||||||||||  |  |||||||||||||||||||| |||||||    
T  29611987 agggtcttgttaacgagtgcccccgggacactctttaaacattctaaaataagtaa 29612042  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 431706 - 431596
Alignment:
Q  195 aaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtg-cccgggggca-tagtta 292  Q
    |||||| |||||||||||||||||   |||||| ||||||||| ||||| ||||||||| ||||||||||  ||||| | || |||||| ||| ||||||    
T  431706 aaatgttaaaattttcaatttccaatgcacttttttacacaaactttcataaaaagttaccatttaaagtctttaaccaatgccccgggagcactagtta 431607  T
Q  293 acatttccctt 303  Q
    |||||||||||    
T  431606 acatttccctt 431596  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 25622499 - 25622556
Alignment:
Q  128 aaagggttttgttaacgagtgcccc--atgcactctttaaacattctaaattaagtaa 183  Q
    ||||||| |||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  25622499 aaagggtcttgttaacgagtgctcccgatgcactctttaaacattctaaattaagtaa 25622556  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 32787621 - 32787550
Alignment:
Q  228 attacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggca-tagttaacattt 298  Q
    |||||||||||||||| | ||||||||||||||||| ||||||  |||||| ||||||| | ||||||||||    
T  32787621 attacacaaattttcatataaagttatcatttaaaggtcttaatgagtgcctgggggcactcgttaacattt 32787550  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 302
Target Start/End: Complemental strand, 12848543 - 12848436
Alignment:
Q  196 aatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgc-ccgggggca-tagttaa 293  Q
    ||||||||| |||||||||||||   ||| | |||||||||| ||||| |||||||| |||||||| || |||||||| ||| |||||  || |||||||    
T  12848543 aatgtcaaagttttcaatttccattgcac-taattacacaaactttcataaaaagttgtcatttaaggtccttaactaatgctccgggaacactagttaa 12848445  T
Q  294 catttccct 302  Q
    |||||||||    
T  12848444 catttccct 12848436  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 12205584 - 12205635
Alignment:
Q  226 ttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgc 277  Q
    |||||||||||||||||| ||||||||| |||||||| || ||||| |||||    
T  12205584 ttattacacaaattttcaaaaaaagttaccatttaaaatttttaacgagtgc 12205635  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 16717579 - 16717631
Alignment:
Q  131 gggttttgttaacgagtgccccatgcactctttaaacattctaaattaagtaa 183  Q
    |||| |||||||||||||| |||  |||||||||| ||||||||| |||||||    
T  16717579 gggtcttgttaacgagtgctccagacactctttaagcattctaaaataagtaa 16717631  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 17774354 - 17774272
Alignment:
Q  195 aaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcc 278  Q
    |||| ||||| |||||||||||||   |||||||||||||||| ||||| ||||||||||||||||||||  ||||| ||||||    
T  17774354 aaatatcaaatttttcaatttccaatacactttattacacaaa-tttcataaaaagttatcatttaaagtcattaaccagtgcc 17774272  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 5223620 - 5223660
Alignment:
Q  30 gataataatttgaaataatgacataatcgaatgcaatcaca 70  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  5223620 gataattatttgaaataattacataattgaatgcaatcaca 5223660  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 8200150 - 8200102
Alignment:
Q  136 ttgttaacgagtgccccatg-cactctttaaacattctaaattaagtaa 183  Q
    |||||||||||| ||||||| ||||||||||| ||| ||||||||||||    
T  8200150 ttgttaacgagtaccccatgacactctttaaagattttaaattaagtaa 8200102  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 302
Target Start/End: Complemental strand, 1876615 - 1876446
Alignment:
Q  136 ttgttaacgagtgccccatg--cactctttaaacattctaaattaagtaannnnnnnnnnnaaatgtcaaaattttcaatttccagctcactttattaca 233  Q
    |||||||||||||||||  |  |||||||||| ||| |||||||||||||           ||||||||||||||||||||||||   ||| | ||||||    
T  1876615 ttgttaacgagtgcccccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcac-tgattaca 1876517  T
Q  234 caaattttcagaaaaagttatcatttaaagttcttaactagtgccc-gggggca-tagttaacatttccct 302  Q
    |||| ||||| ||||| ||| |||||||||| |||||| | ||||| || |||| ||||||||||||||||    
T  1876516 caaactttcataaaaaattaccatttaaagtccttaaccaatgcccaggaggcactagttaacatttccct 1876446  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 304
Target Start/End: Complemental strand, 32133741 - 32133657
Alignment:
Q  222 cactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgc-ccgggggca-tagttaacatttcccttt 304  Q
    |||||||||||||||| ||||| ||||| |||  ||||||| | |||||| ||||| ||||||||| ||||||||||||||||||    
T  32133741 cactttattacacaaactttcataaaaaattactatttaaattccttaaccagtgctccgggggcactagttaacatttcccttt 32133657  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 34722823 - 34722747
Alignment:
Q  222 cactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggcatagttaacattt 298  Q
    |||||||||| ||||| ||||| ||||||||| |||||||||| |||||| ||| |||||||   ||||||||||||    
T  34722823 cactttattatacaaactttcataaaaagttaccatttaaagtccttaaccagttcccggggcactagttaacattt 34722747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 271
Target Start/End: Complemental strand, 31844350 - 31844214
Alignment:
Q  136 ttgttaacgagtgccccatg-cactctttaaacattctaaattaagtaannnnnnnnnnnaaatgtcaaaattttcaatttccagctcactttattacac 234  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||||           ||| |||||| |||| ||||||||   ||||| |||| ||    
T  31844350 ttgttaacgagtgccccagggcactctttaaatattctaaattaagtaattattccttaaaaaagtcaaagttttgaatttccaatgcacttcattatac 31844251  T
Q  235 aaattttcagaaaaagttatcatttaaagttcttaac 271  Q
    ||| ||||| |||||||||  ||||||||| ||||||    
T  31844250 aaactttcataaaaagttactatttaaagtccttaac 31844214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 41960027 - 41959950
Alignment:
Q  222 cactttattacacaaattttcagaaaaagttatcatttaaagttcttaactagtgcccgggggcatagttaacatttc 299  Q
    |||||||||| ||||| ||||| ||||| |||||||||||||| |||||| ||| ||| |||   |||||||||||||    
T  41960027 cactttattatacaaactttcataaaaaattatcatttaaagtccttaaccagtaccccgggcactagttaacatttc 41959950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 1445205 - 1445137
Alignment:
Q  196 aatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatcatttaaagt 264  Q
    ||||||||| | |||||||| ||   |||||||||||||||| ||| ||||||||||| ||||||||||    
T  1445205 aatgtcaaagtgttcaattttcaatgcactttattacacaaacttttagaaaaagttaccatttaaagt 1445137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 38047655 - 38047607
Alignment:
Q  222 cactttattacacaaattttcagaaaaagttatcatttaaagttcttaa 270  Q
    |||||||||||||||| ||||| | |||||||||||||||||| |||||    
T  38047655 cactttattacacaaactttcatataaagttatcatttaaagtccttaa 38047607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 24869367 - 24869436
Alignment:
Q  116 tctcaattttttaaagggttttgttaacgagtgccccat--gcactctttaaacattctaaattaagtaa 183  Q
    |||| ||||||  |||||| |||||||||||||||||    ||||||||||||||| |||||||||||||    
T  24869367 tctctatttttctaagggtcttgttaacgagtgcccctgtggcactctttaaacatgctaaattaagtaa 24869436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 7044471 - 7044423
Alignment:
Q  127 taaagggttttgttaacgagtgccccatgcactctttaaacattctaaa 175  Q
    |||||||||||||||||||||||||   |||||||||||  ||||||||    
T  7044471 taaagggttttgttaacgagtgccctgggcactctttaaggattctaaa 7044423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 19633 - 19684
Alignment:
Q  228 attacacaaattttcagaaaaagttatcatttaaagttcttaactagtgccc 279  Q
    |||||||||||||||| ||||||||||||||||| ||  |||||||||||||    
T  19633 attacacaaattttcataaaaagttatcatttaaggtctttaactagtgccc 19684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1681 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1681
Description:

Target: scaffold1681; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 634 - 699
Alignment:
Q  119 caattttttaaagggttttgttaacgagtgc-cccatgcactctttaaacattctaaattaagtaa 183  Q
    |||| |||| ||||||||||||||||||||| ||||  |||||||||| ||||||||| |||||||    
T  634 caatatttttaagggttttgttaacgagtgctcccagacactctttaagcattctaaaataagtaa 699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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