View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12962_high_2 (Length: 734)
Name: NF12962_high_2
Description: NF12962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12962_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 611; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 17 - 716
Target Start/End: Original strand, 4756638 - 4757337
Alignment:
| Q |
17 |
cagagacatgtcgtaaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4756638 |
cagagacatgtcgtaaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaat |
4756737 |
T |
|
| Q |
117 |
ctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattggtctcattgaggatagtgct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4756738 |
ctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattagtctcattgaggatagtgct |
4756837 |
T |
|
| Q |
217 |
gtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgcttttgaagtcatcactaccatcttcattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4756838 |
gtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgcttttgaagtcatcactaccatcttcattt |
4756937 |
T |
|
| Q |
317 |
cttctgatcgtgatcacgtggaccttggtttggttgaaaatttgtacattgatttgcttaagggaatgaaatcactcgccatcaatctcactggatttgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4756938 |
cttctgatcgtgatcacgtggaccttggtttggttgaaaatttgtacattgatttgcttaagggaatgaaatcactcgccatcaatctcactggatttgc |
4757037 |
T |
|
| Q |
417 |
attccataaagcactcaaggttagtcataatag-nnnnnnnnnnaataattaatcggtgcatgtttggtatcgccgtggattcttcaaaattatggtgaa |
515 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
4757038 |
attccataaagcactcaaggttagtcataatagtttttttttttaataattaatcggtacatgtttggtatcgctgtggattcttcgaaattatggtgaa |
4757137 |
T |
|
| Q |
516 |
ccaccannnnnnnngttgcaaaatcacatcgactcagtcataattttatgatatcaaacatgcatttagtattcaacaccgacaagacattgatttatgt |
615 |
Q |
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| T |
4757138 |
ccaccattttttttgttgcaaaatcacatcgactc-gtcataattttatgatatcaaacatgcatttagtattcaacaccgacaaaacattgatttatgt |
4757236 |
T |
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| Q |
616 |
gatgagaatcaattacttttatacgtgtcattgtggggtttctaaggcaaatataccgtaccttaaatagaatcaggatcaaaggtcaatttattgttga |
715 |
Q |
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| T |
4757237 |
gatgagaatcaattacttttatacgtgtcattgtggggtttctaaggcaaatataccgtaccttaaatagaatcaggatcaaaggtcaatttattgttga |
4757336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 4748803 - 4749220
Alignment:
| Q |
17 |
cagagacatgtcgtaaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaat |
116 |
Q |
| |
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|||||||||||||||| || |||| ||||| || |||||||| ||||||||| |||| | |||| ||| |||| |||| ||||||||||||||| |
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| T |
4748803 |
cagagacatgtcgtaatgtactaaaagacgaggaacatctcaagccaggataccctgcttcagctatggcacttgcagggaaaaaatcattccatggaat |
4748902 |
T |
|
| Q |
117 |
ctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattggtctcattgaggatagtgct |
216 |
Q |
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|||| | | || || ||||||||| || ||| ||| ||||| ||||||||| ||||| |||| | ||||||||||||||| || |||| || |
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| T |
4748903 |
atcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctccaataaatggtcacgaa---ttgtacaattatattggtctcatagaagatattgta |
4748999 |
T |
|
| Q |
217 |
gtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgcttttgaagtcatcactaccatcttcattt |
316 |
Q |
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|||||| |||||||||| | |||||||| ||||||||| ||||||||| |||||| | |||||| ||||||| ||||||||| | ||||| ||| |
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| T |
4749000 |
gtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttctcaaagaggccaaaaagttcacttttgatgtcatcacttctgtcttctttt |
4749099 |
T |
|
| Q |
317 |
cttctgatcgtgatcacgtggaccttggtttggttgaaaatttgtacattgatttgcttaagggaatgaaatcactcgccatcaatctcactggatttgc |
416 |
Q |
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| ||||||||||| || | ||||||| ||||||||| |||||||||||||||||||| ||||||| || | | |||||||| |||| ||| | |
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| T |
4749100 |
cctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacattgatttgcttcgaggaatgaggtcccaatcgatcaatcttcctggctttcc |
4749199 |
T |
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| Q |
417 |
attccataaagcactcaaggt |
437 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
4749200 |
attctataaagcactcaaggt |
4749220 |
T |
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