View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12962_high_6 (Length: 496)
Name: NF12962_high_6
Description: NF12962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12962_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 33 - 483
Target Start/End: Complemental strand, 28485731 - 28485281
Alignment:
| Q |
33 |
tctttgtttctgatgagagatttcagaaatcacacatgataaatttctgttcctaaacatacaagaaaataatgtgctcaaatttgcctatgcaatatga |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28485731 |
tctttgtttctgatgagagatttcagaaatcacacatgataaatttctgttcctaaacatacaagaaaataatgtgctcaaatttgcctatacaatatga |
28485632 |
T |
|
| Q |
133 |
actttatgctactcagacaccttaatgatgccagcattcgagaaaatatgaaaaatgtattctgtcagctcatttgcctaggagagttgcccacattact |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28485631 |
actttatgctactcagacaccttaatgatgctagcattcgagaaaatatgaaaaatgtattctgtcagctcatttgcctaggagagttgcccacattact |
28485532 |
T |
|
| Q |
233 |
ctcagtatgttgagaatcaatttgaacttgatgagtggctgcagatgattgatcgggaagaaccgcatcctcggaaccgacattctgttgattcaactga |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28485531 |
ctcagtatgttgagaatcaatttgaacttgatgagtggctgcagatgattgatcgggaagaaccgcatcctcggaaccgacattctgttgattcaactga |
28485432 |
T |
|
| Q |
333 |
gccagccatcttctcctccatttcaagatctctataagaatacatgttccacacattacaactccaaacccagcaaatgtagctagtaggattgccaaaa |
432 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28485431 |
gcaagccatcttctcctccatttcaagatctctataagaatacatgttccacacattacaactccaaacccagcaaatgtagctagtaggattgccaaaa |
28485332 |
T |
|
| Q |
433 |
cagctcccattttagtctgtcatagtgccatttcaaataaatgtattaatt |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28485331 |
cagctcccattttagtctgtcatagtgccatttcaaataaatgtattaatt |
28485281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University