View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12962_low_14 (Length: 251)
Name: NF12962_low_14
Description: NF12962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12962_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 6651141 - 6650904
Alignment:
| Q |
13 |
aatatcaatattgaaatgggccatggagnnnnnnnnncatacctaggctggaaagtgtttgacgaaaaagcaggaagtggcaagaggtgcaaaatttgaa |
112 |
Q |
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| T |
6651141 |
aatatcaatattgaaatgggccatggagaaaaaaaa-catacctaggctggaaagtgtttgacgaaaaagcaggaagtggcaagaggtgcaaaatttgaa |
6651043 |
T |
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| Q |
113 |
aatcaacaaggaccaagtccaacactcctacactcctcgctttccgtctgttgttgatgagtttgtggctgtgcttgcttctgttgtggtggaagtaata |
212 |
Q |
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| T |
6651042 |
aatcaacaaggaccaagtccaacactcctacactcctcgctttccgtctgttgttgatgagtttgtggctgtgcttgcttctgttgtggtggaagtaata |
6650943 |
T |
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| Q |
213 |
gctgagcctgaagtggaagatgatgatgatgattatgat |
251 |
Q |
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| T |
6650942 |
gctgagcctgaagtggaagatgatgatgatgattatgat |
6650904 |
T |
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