View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12962_low_17 (Length: 206)
Name: NF12962_low_17
Description: NF12962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12962_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 39628561 - 39628684
Alignment:
| Q |
67 |
tttgagaagatgaatcgcctcagaattctcattgttcgaaatacaacattttcatcagagcctaaacatctgccaaatcagttaaggctgcttgagtggg |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39628561 |
tttgagaagatgaatcgcctcagaattctcattgttcgaaataaaacattttcatcagagcctaaacatctgccaaatcagttaaggctgcttgagtggg |
39628660 |
T |
|
| Q |
167 |
acgagtacccttcaaagtcttttc |
190 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39628661 |
acgagtacccttcaaagtcttttc |
39628684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 39621317 - 39621440
Alignment:
| Q |
67 |
tttgagaagatgaatcgcctcagaattctcattgttcgaaatacaacattttcatcagagcctaaacatctgccaaatcagttaaggctgcttgagtggg |
166 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| || | |||| |||||||| |||| |
|
|
| T |
39621317 |
tttgagcagatgaattgcctcagaattctcattgttcgaaatacaacattttcatcggagcctaaacatctaccagataatttaactctgcttgattggg |
39621416 |
T |
|
| Q |
167 |
acgagtacccttcaaagtcttttc |
190 |
Q |
| |
|
| ||||||||||||||||| |||| |
|
|
| T |
39621417 |
aggagtacccttcaaagtcatttc |
39621440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University