View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12962_low_3 (Length: 630)
Name: NF12962_low_3
Description: NF12962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12962_low_3 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 62 - 630
Target Start/End: Original strand, 1684034 - 1684617
Alignment:
| Q |
62 |
tcacctagataaaacctctaataaaatttgtaatatcatgctaatttgnnnnnnnnnnnnn-gaagtgccataatcagatcagactacagtcacagctgg |
160 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| |||||||| |||| |
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| T |
1684034 |
tcacctagataaaacctctaataaaatttgtaatgtcatcctaatttgaaaattgaaaaaaagaagtgccataatcagatcagactgcagtcacaactgg |
1684133 |
T |
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| Q |
161 |
aac---atcattcttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaatacca |
257 |
Q |
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| | | || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1684134 |
agctggaccacccttatcatcatcaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaatacca |
1684233 |
T |
|
| Q |
258 |
ttgctgatctgtagtagtcagtgaaaatgtacattaattaattaatatgggttaagtataaatcattcatccaattattaactcacaagtcacaacaata |
357 |
Q |
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||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1684234 |
ttgctgatctgcagtagtcagtgaaagtgta----tattaattaatatgggttaagtataaatcattcatccaattattaactcacaagtcacaacaata |
1684329 |
T |
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| Q |
358 |
ctataggaatataaattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagcca |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1684330 |
ctataggaatataaattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagcca |
1684429 |
T |
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| Q |
458 |
gaatggcatgtatttcacactcttagtcgttataacctttttctgttgatcatatcatatgtaacaagtttagggaaaatactttataagatacagcata |
557 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
1684430 |
gaatggcatgtatttcacactcttagtcgttataacctttttctgttgatcatatcatatgtaacaagtttagagaaaatactttataagatacagtata |
1684529 |
T |
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| Q |
558 |
attcatatctgaatata---------------aagttacttaccatgattgtaagaggagaaatatacatcaatatgtttaagacatc |
630 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1684530 |
attcatatctgaatataaagttattggaatagaagttacttaccatgattgtaagaggagaaatatacatcaatatgttgaagacatc |
1684617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 24 - 539
Target Start/End: Original strand, 1694421 - 1694941
Alignment:
| Q |
24 |
caataaaatttgtaatgtcatcctgatttgtnnnnnnntcacctagataaaacctctaataaaatttgtaatatcatgctaatttgnnnnnnnnnnnnng |
123 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| | |
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| T |
1694421 |
caataaaatttgtaatgtcatcctaatttgtaaaaaaatcacctagataaatcctctaataaaatttgtaatgtcatgctaatttgaaaaaagaaaaaag |
1694520 |
T |
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| Q |
124 |
aagtgccataatcagatcagactacagtcacagctggaacatcattcttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagtat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1694521 |
aagtgccataatcagatcagactacagtcacagctggagcatcattcttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagtat |
1694620 |
T |
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| Q |
224 |
gagctgaacagttccagagattactccaataccattgctgatctgtagtagtcagtgaaaatgtacattaattaattaatatgggttaagtataaatcat |
323 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| |||||||| |||||| || |||||||||||||||||| | |
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| T |
1694621 |
gagctgaatagttccagagattactccaataccattactgatctgcaataatcagtaaaaatgtatattaat-----aacatgggttaagtataaatctt |
1694715 |
T |
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| Q |
324 |
t---------------catccaattattaactcacaagtcacaacaatactataggaatataaattaccagaacataaaggtcaaagggatggagcagag |
408 |
Q |
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| T |
1694716 |
taatccaattgaattacatacaattattaactcacaaatcacaacaatactataggaatataaattaccagaacataaatgtcaaaggggtggagcagag |
1694815 |
T |
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| Q |
409 |
catatgttgtccagcaaagtccattgaggaagttaaacacagagagccagaatggcatgtatttcacactcttagtcgttataacctttttctgttgatc |
508 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || |||||||| || ||||| |
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| T |
1694816 |
catatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggcatgtatttcacactcttggttcttataaccgttgcctgtt---- |
1694911 |
T |
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| Q |
509 |
atatcatatgtaacaagtttagggaaaatac |
539 |
Q |
| |
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|||||||||||||||||||| |||||||| |
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| T |
1694912 |
-catcatatgtaacaagtttagagaaaatac |
1694941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 405 - 496
Target Start/End: Original strand, 1699904 - 1699995
Alignment:
| Q |
405 |
agagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagccagaatggcatgtatttcacactcttagtcgttataacctt |
496 |
Q |
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|||||||||||||||||||| | |||||||||||||| | ||||||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
1699904 |
agagcatatgttgtccagcacaaaccattgaggaagttggttagagagagccaaaatggcatgtatttcacactcttggtttttataacctt |
1699995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 504
Target Start/End: Original strand, 1674181 - 1674314
Alignment:
| Q |
371 |
aattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagccagaatggcatgtat |
470 |
Q |
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||||||||| | ||||| ||| ||||| | || ||||||||||||||||| || | |||||| || ||| || || |||| || |||||||||||||| |
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| T |
1674181 |
aattaccaggagataaatgtcgaaggggttgatgagagcatatgttgtccaacacaatccattaagaaagatagccagagagggcaagaatggcatgtat |
1674280 |
T |
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| Q |
471 |
ttcacactcttagtcgttataacctttttctgtt |
504 |
Q |
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||||||||||| || ||||||| |||| ||||| |
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| T |
1674281 |
ttcacactctttgtttttataacattttcctgtt |
1674314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 575 - 626
Target Start/End: Original strand, 1694985 - 1695036
Alignment:
| Q |
575 |
aagttacttaccatgattgtaagaggagaaatatacatcaatatgtttaaga |
626 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
1694985 |
aagttacttaccatgatcgtaagaggagaagcatacatcaatatgttgaaga |
1695036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 1970554 - 1970616
Alignment:
| Q |
173 |
atcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagt |
235 |
Q |
| |
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||||||| |||||||||| |||||| ||||| ||||||| |||||| ||||||||||||||| |
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| T |
1970554 |
atcatcatcaatctgattttctcccttgcacgagtaataagcatataatatgagctgaacagt |
1970616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 1699287 - 1699335
Alignment:
| Q |
214 |
catatagtatgagctgaacagttccagagattactccaataccattgct |
262 |
Q |
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| T |
1699287 |
catatagtatgagctgaacaattccagaaaccactccaataccattgct |
1699335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 1673944 - 1674033
Alignment:
| Q |
175 |
catcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctga |
264 |
Q |
| |
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||||| || ||| ||| |||||| ||||||| |||| |||||| ||||||||||||| || |||||| |||||||||||||||||| |
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| T |
1673944 |
catcatcattcttattttctcccttgcaccaaaaataaacatataatatgagctgaacaaaacctgagattgctccaataccattgctga |
1674033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 619
Target Start/End: Original strand, 1971025 - 1971069
Alignment:
| Q |
575 |
aagttacttaccatgattgtaagaggagaaatatacatcaatatg |
619 |
Q |
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||||||||||||| ||| ||||||||||| | ||||||||||||| |
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| T |
1971025 |
aagttacttaccacgatggtaagaggagagacatacatcaatatg |
1971069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 626
Target Start/End: Complemental strand, 43151628 - 43151576
Alignment:
| Q |
574 |
aaagttacttaccatgattgtaagaggagaaatatacatcaatatgtttaaga |
626 |
Q |
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||||||||||||||||| |||||||||||| |||||||| | |||||| |||| |
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| T |
43151628 |
aaagttacttaccatgactgtaagaggagagatatacataattatgttcaaga |
43151576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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