View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12962_low_7 (Length: 492)
Name: NF12962_low_7
Description: NF12962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12962_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 479
Target Start/End: Complemental strand, 40226278 - 40225805
Alignment:
| Q |
13 |
aatatgattggtgaaggcggctttgggagagtatacaaagggcgcattaaaagcataaataataaggtataatattacttttactaggagttatttgaat |
112 |
Q |
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| T |
40226278 |
aatatgattggtgaaggaggctttgggagagtatacaaagggcgcattaaaagcataaataataaggtataatattacttatgctaggagttatttgaat |
40226179 |
T |
|
| Q |
113 |
attatgctaa--aagttattcaatttgtaagcaatgttttaaatattgaacccaattgaacatcaaaccggcaagacctctggatcatatttcaaccgtc |
210 |
Q |
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| T |
40226178 |
attatgctaacaaagttattcaatttgtaagcaatgttttaaaaattgaaccaaattgaacatcaaaccggcaagacttctggatcatatttcaaccgtc |
40226079 |
T |
|
| Q |
211 |
ttaaacggtttg-----aatggggataaaaccttgatcgaagtgccaattcaaggttcaaccggttaaaccgccttgttcaatttttaaaacgcatatag |
305 |
Q |
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| T |
40226078 |
ttaaacggtttggtttgaatggggataaaactttgatcaaagtgccaattcaaggttcaaccggttaaaccgtcttgttcaatttttaaaacgcatatag |
40225979 |
T |
|
| Q |
306 |
taagtgaacttatcaatgttgtgttacttatactatatgcaggttgttgctgtaaagaaacttaacaaggatggatttcaaggaagcagggaatttcttg |
405 |
Q |
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| T |
40225978 |
taagcgaacttgtcaatgttgtgttacttatactatatgcaggttgttgctgttaagaaacttaacaaggatggatttcaaggaagcagggaatttcttg |
40225879 |
T |
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| Q |
406 |
cagaggttatgattttgagtttcttgcaccactctaaccttgtcaatttggtagggtattgtgcagaaggtgat |
479 |
Q |
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| T |
40225878 |
cagaggttatgattttgagtttcttgcaccactctaaccttgtcaatttggtagggtattgtgcagaaggtgat |
40225805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 479
Target Start/End: Complemental strand, 19994854 - 19994718
Alignment:
| Q |
343 |
tgcaggttgttgctgtaaagaaacttaacaaggatggatttcaaggaagcagggaatttcttgcagaggttatgattttgagtttcttgcaccactctaa |
442 |
Q |
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||||| |||||||||| ||| |||| ||| ||||||||||||| | ||| ||||| |||| ||||||| ||||||||||| | |||||||| |||| |
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| T |
19994854 |
tgcagattgttgctgtgaaggcacttgacagaaatggatttcaagggaacagagaattccttgtagaggttttgattttgagtcttttgcaccatcctaa |
19994755 |
T |
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| Q |
443 |
ccttgtcaatttggtagggtattgtgcagaaggtgat |
479 |
Q |
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| T |
19994754 |
ccttgttaacttggtagggtattgtgctgaaggtgat |
19994718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 451
Target Start/End: Complemental strand, 19999044 - 19998969
Alignment:
| Q |
376 |
atggatttcaaggaagcagggaatttcttgcagaggttatgattttgagtttcttgcaccactctaaccttgtcaa |
451 |
Q |
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||||||||||||| | |||||| ||||||| ||||||| ||||||||||| | |||| || ||||||||||||| |
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| T |
19999044 |
atggatttcaagggaacagggagtttcttgtagaggttttgattttgagtcttttgcgtaaccctaaccttgtcaa |
19998969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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