View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12962_low_8 (Length: 465)

Name: NF12962_low_8
Description: NF12962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12962_low_8
NF12962_low_8
[»] chr5 (3 HSPs)
chr5 (18-453)||(27196573-27197002)
chr5 (26-69)||(11818352-11818395)
chr5 (27-69)||(7712075-7712117)
[»] chr1 (2 HSPs)
chr1 (177-222)||(34779615-34779660)
chr1 (176-246)||(1292199-1292269)
[»] chr4 (1 HSPs)
chr4 (174-238)||(37943177-37943241)
[»] scaffold0245 (1 HSPs)
scaffold0245 (176-246)||(18604-18674)
[»] chr8 (1 HSPs)
chr8 (179-224)||(36945279-36945324)
[»] chr3 (2 HSPs)
chr3 (173-222)||(8369664-8369713)
chr3 (28-68)||(30611679-30611719)
[»] scaffold0508 (1 HSPs)
scaffold0508 (20-64)||(1584-1628)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 27196573 - 27197002
Alignment:
Q  18 ggaaaatgacctcaaaatattttaactcacttataaatatataatatgaaaacctatgaagttgagtt-gtaaaaccaaaggcctcgtatccttttagtt 116  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  27196573 ggaaaaagacctcaaaatattttaactcacttataaatatatgatatgaaaacttttgaagttgagtttgtaaaaccaaaggcctcgtatccttttagtt 27196672  T
Q  117 caatgttcaactcttggctccaataaatctgnnnnnnnnnnnnccttcataaaacatatgtaatttttatttattgtaaaagatctcacaataaaaattg 216  Q
    |||||||||| ||||||||||||||||||||            | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27196673 caatgttcaaatcttggctccaataaatctgtttttttttttgc-ttcataaaacatatgtaatttttatttattgtaaaagatttcacaataaaaattg 27196771  T
Q  217 ttttaggcgtctacacttgttgtgccggccttagactacaaaaaacaaatatttatatgtttcattcgaattacattcttccacacaaaaatgatgatat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  27196772 ttttaggcgtctacacttgttgtgccggccttagactacaaaaaacaaatatttagatgtttcatttgaattacattcttccacacaaaaatgatgatat 27196871  T
Q  317 actttgcaacttttgcggattaaaaaatgtaaataacattgataataacattnnnnnnntacacaatatagagacaaaaacttttgaacaaagacaaata 416  Q
    ||||| |||||||| ||||||||||||||||||||||||| | || || |         |||||||||||||||||||||||||||||||||||||| ||    
T  27196872 acttttcaacttttacggattaaaaaatgtaaataacattaaaaaaaaaa--------atacacaatatagagacaaaaacttttgaacaaagacaagta 27196963  T
Q  417 gtagtta--atcgtggtgccaagtatatgtgtcagatca 453  Q
    |||||||   |||||||||||||||| ||||||||||||    
T  27196964 gtagttactctcgtggtgccaagtatttgtgtcagatca 27197002  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 11818395 - 11818352
Alignment:
Q  26 acctcaaaatattttaactcacttataaatatataatatgaaaa 69  Q
    ||||||||||||||||| | |||||||||||||||| |||||||    
T  11818395 acctcaaaatattttaatttacttataaatatataacatgaaaa 11818352  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 7712075 - 7712117
Alignment:
Q  27 cctcaaaatattttaactcacttataaatatataatatgaaaa 69  Q
    |||||||||||||||| |  |||||||||||||||||||||||    
T  7712075 cctcaaaatattttaagttgcttataaatatataatatgaaaa 7712117  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 34779615 - 34779660
Alignment:
Q  177 taatttttatttattgtaaaagatctcacaataaaaattgttttag 222  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  34779615 taatttttatttattttaaaagatctcacaataaaaattgttttag 34779660  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 1292269 - 1292199
Alignment:
Q  176 gtaatttttatttattgtaaaagatctcacaataaaaattgttttaggcgtctacacttgttgtgccggcc 246  Q
    |||||||||||||||| ||||||  ||||||| |||| ||| ||||||| |||| || ||||| |||||||    
T  1292269 gtaatttttatttattttaaaaggcctcacaagaaaagttgctttaggcctctaaacatgttgggccggcc 1292199  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 37943177 - 37943241
Alignment:
Q  174 atgtaatttttatttattgtaaaagatctcacaataaaaattgttttaggcgtctacacttgttg 238  Q
    |||||||||||||||||| |||||| |||||||||| || || |||||||| |||| || |||||    
T  37943177 atgtaatttttatttattttaaaaggtctcacaatagaagttattttaggcctctaaacatgttg 37943241  T

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Target: scaffold0245 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 18674 - 18604
Alignment:
Q  176 gtaatttttatttattgtaaaagatctcacaataaaaattgttttaggcgtctacacttgttgtgccggcc 246  Q
    |||||||||||||||| ||||||  ||||||| |||| ||| ||||||| |||| || ||||| |||||||    
T  18674 gtaatttttatttattttaaaaggcctcacaagaaaagttgctttaggcctctaaacatgttgggccggcc 18604  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 36945279 - 36945324
Alignment:
Q  179 atttttatttattgtaaaagatctcacaataaaaattgttttaggc 224  Q
    ||||||||||||| |||||||||||| ||||||| ||||| |||||    
T  36945279 atttttatttattttaaaagatctcataataaaagttgttgtaggc 36945324  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 8369713 - 8369664
Alignment:
Q  173 tatgtaatttttatttattgtaaaagatctcacaataaaaattgttttag 222  Q
    ||||||||||||||||||| ||||||||| || |||| ||| ||||||||    
T  8369713 tatgtaatttttatttattttaaaagatcacataatagaaagtgttttag 8369664  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 30611719 - 30611679
Alignment:
Q  28 ctcaaaatattttaactcacttataaatatataatatgaaa 68  Q
    ||||||||||||||| | || ||||||||||||||||||||    
T  30611719 ctcaaaatattttaattaacatataaatatataatatgaaa 30611679  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 1584 - 1628
Alignment:
Q  20 aaaatgacctcaaaatattttaactcacttataaatatataatat 64  Q
    ||||||||||||||||||||||| |  ||||||||||||| ||||    
T  1584 aaaatgacctcaaaatattttaatttgcttataaatatatgatat 1628  T

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