View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12962_low_9 (Length: 451)
Name: NF12962_low_9
Description: NF12962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12962_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Complemental strand, 40226725 - 40226281
Alignment:
| Q |
9 |
gagaagaacaccaagaacacattgaagaaaagcattaaggactatcataacatttgttctaaatctggtaaattttttacccttcaatgttaatcttcca |
108 |
Q |
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| T |
40226725 |
gagaagaacaccaagaacacattgaagaaaagcattaaggactatcataacatttgttctaaatctggtaagttttttacccttcaatgttaatcttcca |
40226626 |
T |
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| Q |
109 |
cattgtcccaattatttaattacttttttcaattgcaaggttctgaatttctggtttcacatcaaatattgtattcattttc--annnnnnnnngcaaag |
206 |
Q |
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| T |
40226625 |
cattgtcccaattatttaattacttttttcaattgcaaggttctgaatttctggtttcacatcaaatattgtattcatttttttatttttttttgcaaag |
40226526 |
T |
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| Q |
207 |
ggtattgattttcatgttaaagaggttcaatttaatgtctcatgtctagagattattgttgttttctttatgaaatgttagcacatcaatgttgttttct |
306 |
Q |
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| T |
40226525 |
ggtattgattttcatgttaaagaggttcaatttaatgtctcatgtctagatattattgttgttttctttatgaaatgttagcacatcaatgttgttttct |
40226426 |
T |
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| Q |
307 |
ttaattgtaaaaatttatattgtagatggtggcaaacggaagtacatagcagaggaagaaaacacaagaaatggaaaaggaaatattacctctaagatat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40226425 |
ttaattgtaaaaatttatattgtagatggtggcaaacggaagtacatagcagaggaagaaaacacaagaaatggaaaaggaaatattacctctaagatat |
40226326 |
T |
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| Q |
407 |
tttcttaccatgagctatgtgttgcaactaagaattttcatatca |
451 |
Q |
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| T |
40226325 |
tttcttaccatgagctatgtgttgcaactaagaattttcatatca |
40226281 |
T |
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