View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12963_high_4 (Length: 337)
Name: NF12963_high_4
Description: NF12963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12963_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 37495417 - 37495091
Alignment:
| Q |
1 |
tttcacacgttttcttgtatcagcccttgctttgcgagacgcatatcttatttgcttaccaaacctgatttgttgtaccaagtcaacttataaatttaag |
100 |
Q |
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| T |
37495417 |
tttcacacgttttcttgtatcagcccttgctttgcgagacgcatatcttatttgcttaccaaacctgatttgttgtaccaagtcaacttataaatttacg |
37495318 |
T |
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| Q |
101 |
aatcatatgatagttaacgcttgatgagttgttaactttagaatcatatgatagttaacacagtccaaataactgttagcactctaattcacttatttat |
200 |
Q |
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| T |
37495317 |
aatcatatgatagttaacgctcgatgagttgttaactttagaatcatatgatagttaacacagtccaaataactgttagcactctaattcacttatttat |
37495218 |
T |
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| Q |
201 |
gttttacagtattattatacaatagagaataaacttcaatacacatttatatataatgcaggaagaaacaaagaaaataacaaaatagttctagatttgt |
300 |
Q |
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| T |
37495217 |
gttttacagtattattatacaatagagaataaacttcaatacacatttatatataatgcaggaagaaacaaagaaaataacaaaatagttctagatttgt |
37495118 |
T |
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| Q |
301 |
agacacttctaatgacttcagcctatg |
327 |
Q |
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| T |
37495117 |
agacacttctaatgacttcagcctatg |
37495091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29461888 - 29461823
Alignment:
| Q |
1 |
tttcacacgttttcttgtatcagcccttgctttgcgagacgcatatcttatttgcttaccaaacct |
66 |
Q |
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| T |
29461888 |
tttcacacgttttctgacatcagcccttgccttccgagaagcatatcttactttcttatcaaacct |
29461823 |
T |
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