View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12963_high_6 (Length: 329)
Name: NF12963_high_6
Description: NF12963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12963_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 131 - 315
Target Start/End: Original strand, 37495619 - 37495803
Alignment:
| Q |
131 |
ttaatgcagccagattattattcaaaacttgactactttggtggttggtacagacatgttaaagcattcaacaagttagtatttagaaatttagatgaaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37495619 |
ttaatgcagccagattattattcaaaacttgactacttaggtggttggtacagacatgttaaagcattcaacaagttagtatttagaaatttagatgaaa |
37495718 |
T |
|
| Q |
231 |
aataagatatagaaaaggttttgcatttggaaattgcagaataagagatttcttgtatacaaagatattgcatttagttatatat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37495719 |
aataagatatagaaaaggttttgcatttagaaattgcagaataagagatttcttgtatacaaagatattgcatttagttatatat |
37495803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37495455 - 37495586
Alignment:
| Q |
1 |
atcctcttttgagcgaccactaaacattatcttcaatcacaaaattttccttgcaggatatgattctgattggtaagctaaggtagtcccattgtgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37495455 |
atcctcttttgagcgaccactaaacattatctgcaatcacaaaattttccttgcaggatatgattctgattggtaagctaaggtagtcccattgtgaata |
37495554 |
T |
|
| Q |
101 |
cattgttttgttcattcttaatcaaaacactt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
37495555 |
cattgttttgttcattcttaatcaaaacactt |
37495586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University