View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12963_low_1 (Length: 550)
Name: NF12963_low_1
Description: NF12963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12963_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 1489802 - 1490346
Alignment:
| Q |
1 |
ctaaaataataatgttnnnnnnntttgtcaaatgaaattaaatagcatgtacaatttcacacaaaataacagttttagtagtttaccttagtcttttatg |
100 |
Q |
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| T |
1489802 |
ctaaaataataatgttaaaaaaatttgtcaaatgaaattaaatagcatgtacaatttcacacaaaataacagttttagtagtttaccttagtcttttatg |
1489901 |
T |
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| Q |
101 |
tatgcttgttttgttctttgacttttcttatgcattaccannnnnnnnn-----ctgttgttgagaataggcctctggtggaaagaagaagattgtaggt |
195 |
Q |
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| T |
1489902 |
tatgcttgttttgttctttgacttttcttatgcattaccattttttttttttttctgttgttgagaataggcctctggtggaaagaagaagattgtaggt |
1490001 |
T |
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| Q |
196 |
gtgttctacaaaggcggcgaatatgcttccttgaatcccaattttgttggatgtgttgaaggagcattaggtatacgcgagtggttggaatcacaaggac |
295 |
Q |
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| T |
1490002 |
gtgttctacaaaggcggcgaatatgcttccttgaatcccaattttgttggatgtgttgaaggagcattaggtatacgcgagtggttggaatcacaaggac |
1490101 |
T |
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| Q |
296 |
atgaatacattgtcactgatgacaaagaaggactcaattctggttagcattatgccaaattgatacaccctcttattacgtctatgcagtaactaaacaa |
395 |
Q |
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| T |
1490102 |
atgaatacattgtcactgatgacaaagaaggactcaattctggttagcattatgccaaattgatacaccctcttattacgtctatgcagtaactaaacaa |
1490201 |
T |
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| Q |
396 |
atatatttaattaagaatatgcagataatatctcaagtttgtgattgcttgaacttatgactaatttttgtcatgttgccagaacttgagaagcacattc |
495 |
Q |
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| T |
1490202 |
atatatttaattaagaatatgcagataatatctcaagtttgtgattgcttgaacttatgactaatttttgtcatgttgccagaacttgagaagcacattc |
1490301 |
T |
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| Q |
496 |
ctgatctcaatgtcctgatatccacaccatttcaccctgcctatg |
540 |
Q |
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| T |
1490302 |
ctgatctcaatgtcctgatatccacaccatttcaccctgcctatg |
1490346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 156 - 369
Target Start/End: Original strand, 1494739 - 1494952
Alignment:
| Q |
156 |
ttgagaataggcctctggtggaaagaagaagattgtaggtgtgttctacaaaggcggcgaatatgcttccttgaatcccaattttgttggatgtgttgaa |
255 |
Q |
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| T |
1494739 |
ttgagaataggcctctgaaggaaagaagaaaattgtaggtgtgttctacaaaggaaatgagaatgctgcatccaatcccaattttgttggatgtgttgaa |
1494838 |
T |
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| Q |
256 |
ggagcattaggtatacgcgagtggttggaatcacaaggacatgaatacattgtcactgatgacaaagaaggactcaattctggttagcattatgccaaat |
355 |
Q |
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| T |
1494839 |
ggagcattaggtatacgtgagtggcttgaatcacaaggacatgaatacattgtcactgatgacaaagaaggacctgattctggttagaattttgacaaat |
1494938 |
T |
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| Q |
356 |
tgatacaccctctt |
369 |
Q |
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| T |
1494939 |
taatccaccctctt |
1494952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 469 - 540
Target Start/End: Original strand, 1495007 - 1495078
Alignment:
| Q |
469 |
tgttgccagaacttgagaagcacattcctgatctcaatgtcctgatatccacaccatttcaccctgcctatg |
540 |
Q |
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| T |
1495007 |
tgttaccagaactcgagaagcacattcccgatctgcatgtcctgatatctacaccatttcaccctgcctatg |
1495078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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