View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12963_low_11 (Length: 234)
Name: NF12963_low_11
Description: NF12963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12963_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 48345493 - 48345281
Alignment:
| Q |
22 |
acttcttcatttttcttcatagaaaaatccctcaaaatcttatggttaagatggtactctgttaaaaattctctagcaacttcctcctctttcttactct |
121 |
Q |
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| T |
48345493 |
acttcttcatttttcttcatagaaaaatccctcaaaatcttatggttaagatggtactctcttaaaaattctctagcaacttcctcctctttcttactct |
48345394 |
T |
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| Q |
122 |
tgtccacaacttcttcattcttctttgtaactcctttattcaaatatttatgaccacaagctcgattatcttcatcaacaatcacactcaccgggtaaaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48345393 |
tgtccacaacttcttcattcttctttgtaactcctttattcaaatatttatgaccacaagctcgattatcttcatcaacaatcacactcaccgggtaaaa |
48345294 |
T |
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| Q |
222 |
acggaccgttctt |
234 |
Q |
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||||||||||||| |
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| T |
48345293 |
acggaccgttctt |
48345281 |
T |
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