View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12963_low_2 (Length: 513)
Name: NF12963_low_2
Description: NF12963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12963_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Original strand, 557096 - 557584
Alignment:
| Q |
8 |
acatcatcacaagaaagaaataaatgtcgacaaaaacagtaaaacgagagaccaaaataatcagaatcaaccagcaacaacaggtgattctttcgtttgg |
107 |
Q |
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| T |
557096 |
acatcaccacaagaaagaaataaatgtcgacaaaaa-agtaaaacgagagaccaaaataatcagaatcaaccagcaacaacaggtgattctttcgtttgg |
557194 |
T |
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| Q |
108 |
aacacaataatatcacaaatatcaattcagtttatagtacagattatgaaaaacaagattttgagcagttcataatatgggagcttcctatcacataggc |
207 |
Q |
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| T |
557195 |
aacacaataatatcacaaatatcaattcagtttatagtacagattatgaaaaacaagattttgagcagttcataatatgggagcttcctatcacataggc |
557294 |
T |
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| Q |
208 |
actgataaaaatgcatacatccaagtcttccaacaacagctgcatccctatatacaaagctttgcaaccaacatccatagaggaacataataggttaagt |
307 |
Q |
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| T |
557295 |
actgataaaaatgcatacatccaagtcttccaacaacagctgcatccctatatacaatgctttgcaaccaacatccatagaggaacataataggttaagt |
557394 |
T |
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| Q |
308 |
tttttcaagtcttcacacaatagttagtcgataaatttctagaatctacatcaaacaaaacagaatttcataacaggcacaataagaaatagaataattc |
407 |
Q |
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| T |
557395 |
tttttcaagtcttcacacaatagttagtcgataaatttctagaatctacatcaaacaaaacagaatttcataacaggcacaataagaaatagaataattc |
557494 |
T |
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| Q |
408 |
ttgttggcatggtaagatataaacataattacttattttcatcaaagatgtagggtgcattagaaagatgtcaattttccataaaatttc |
497 |
Q |
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| T |
557495 |
ttgttggcatggtaagatataaacataattacttattttcatcaaagatgtagggcgcattagaaagatgtcaattttccataaaatttc |
557584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 324 - 493
Target Start/End: Complemental strand, 1538547 - 1538377
Alignment:
| Q |
324 |
acaatagttagtcgataaatttctagaatctacatcaaacaaaacagaatttcataacaggcacaataagaaatagaataattcttgttggcatggtaag |
423 |
Q |
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| T |
1538547 |
acaatagttagtcaataaatttctagaatctacatcaaacaaaactgcatttcataacaggcacaataagaaattgaatatttctcgtt-gcatggtaag |
1538449 |
T |
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| Q |
424 |
atataaacataa--ttacttattttcatcaaagatgtagggtgcattagaaagatgtcaattttccataaaa |
493 |
Q |
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| T |
1538448 |
atattaacacaaagtttcttattttctaaagatatgtaggcaacagtagaaagatgtcaattttcaataaaa |
1538377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 357 - 477
Target Start/End: Complemental strand, 1514597 - 1514477
Alignment:
| Q |
357 |
atcaaacaaaacagaatttcataacaggcacaataagaaatagaataattcttgttggcatggtaagatataaacataattacttattttcatcaaagat |
456 |
Q |
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| T |
1514597 |
atcaaacaaagcataatttgataccaagcacaaaaagaaatagaaagtttctggttggcatggtatgacgttaacacaattacttattttcatcaaagat |
1514498 |
T |
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| Q |
457 |
gtagggtgcattagaaagatg |
477 |
Q |
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| T |
1514497 |
gtaggcatcattagaaagatg |
1514477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 477
Target Start/End: Complemental strand, 1490553 - 1490433
Alignment:
| Q |
357 |
atcaaacaaaacagaatttcataacaggcacaataagaaatagaataattcttgttggcatggtaagatataaacataattacttattttcatcaaagat |
456 |
Q |
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| T |
1490553 |
atcaaacaaagcataatttcataccaagcacaaaaagaaatagaaagtttctggttggcatggtatgacgttaacacaattacttattttcatgaaagat |
1490454 |
T |
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| Q |
457 |
gtagggtgcattagaaagatg |
477 |
Q |
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| T |
1490453 |
gtagacatcattagaaagatg |
1490433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 1491646 - 1491545
Alignment:
| Q |
36 |
gacaaaaacagtaaaacgagagaccaaaataatcagaatcaaccagcaacaacaggtgattctttcgtttggaacacaataatatcacaaatatcaattc |
135 |
Q |
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|||||||| |||||| |||||||| |||||||||||||||||| |||||||| ||||| ||| |||||| ||| | ||||| |||||| ||||||| |
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| T |
1491646 |
gacaaaaatagtaaagtgagagacctcaataatcagaatcaaccaacaacaacaagtgatgtttttgtttggcacaaagtaataggacaaatttcaattc |
1491547 |
T |
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| Q |
136 |
ag |
137 |
Q |
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|| |
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| T |
1491546 |
ag |
1491545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 422
Target Start/End: Original strand, 6004956 - 6005050
Alignment:
| Q |
328 |
tagttagtcgataaatttctagaatctacatcaaacaaaacagaatttcataacaggcacaataagaaatagaataattcttgttggcatggtaa |
422 |
Q |
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| T |
6004956 |
tagttactcaataacttcctagaatcgatatcaaccaaagcataatttcacaacaagcacaataagagatacaagatttctcgttggcatggtaa |
6005050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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