View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12963_low_3 (Length: 465)
Name: NF12963_low_3
Description: NF12963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12963_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 423
Target Start/End: Complemental strand, 55878866 - 55878454
Alignment:
| Q |
14 |
atatccaagaatcagtgcttgatgattaatttgaaattaaaaagaaaagaaatctctcaagctataaactataatcaccttaagtcatagcagtactcaa |
113 |
Q |
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| T |
55878866 |
atatccaacaattagtgcttgatgattaatttgaaattaaaaagaaaagaaatctctcaagctataaactattataaccttatgtcatagcagtactcaa |
55878767 |
T |
|
| Q |
114 |
atggaagataatcagaattagaaaatgaatgcctttgttt---catttattctatgacattccatgcatcatcaacataaattggttttcaatgaatcaa |
210 |
Q |
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| T |
55878766 |
agggaagatcatcagaatcagaaaacgaatgccttttttttttcatttattctatgacattccatgcatcagcaacataaattcgttttcaatgaatcaa |
55878667 |
T |
|
| Q |
211 |
tgaacatatttacgctagtgaaagacggaatttttcacaaaattgtgaatatatcataattgaaatccattcttcattgaaagtgggtaatgagaagtgt |
310 |
Q |
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| T |
55878666 |
tgaacatatgtacgctagtgaaagacagaatttttcacaaaactgccaatatatcataattgaaatctagtcttcattgaaagtgggtaatgagaaatgt |
55878567 |
T |
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| Q |
311 |
aaaacagaaaaaacaaatcaattaagaagattgcatcaatgtataattaaaatagcagagcaaatcggttgagacacattgcataccttaattctcatct |
410 |
Q |
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| T |
55878566 |
aaaacagaaccaacaaatcaattaagaagattgcatcaatgtataattaaaatagcaaatcaaatcagttgtgacacattgcataccttaattctcatct |
55878467 |
T |
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| Q |
411 |
ctcaactctttct |
423 |
Q |
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| T |
55878466 |
ttaatctctttct |
55878454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 46622955 - 46623074
Alignment:
| Q |
265 |
cataattgaaatccattcttcattgaaagtgggtaatgagaagtgtaaaacagaaaaaacaaatcaattaagaagattgcatcaatgtataattaaaata |
364 |
Q |
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| T |
46622955 |
cataattgaaatctagtcttcattggaagtgggtaatgagatgagtcaaacagaaacaacgaatcaattaagaagattgtgtcaacatacgattaaaata |
46623054 |
T |
|
| Q |
365 |
gcagagcaaatcggttgaga |
384 |
Q |
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| T |
46623055 |
gcagagcaaatcagttgaga |
46623074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 9062490 - 9062627
Alignment:
| Q |
16 |
atccaagaatcagtgcttgatg--attaatttgaaattaaaaagaaaagaaatctctcaagctataaactataatcaccttaagtcatagcagtactcaa |
113 |
Q |
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|||||| |||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9062490 |
atccaacaatcagtgcttggtgtgattaatttgaaattaaaaagaaaagaaatctttcaagctataaactataatcaccttaagtcatagcagtactcaa |
9062589 |
T |
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| Q |
114 |
atggaagataatcagaattagaaaatgaatgcctttgt |
151 |
Q |
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| T |
9062590 |
agggaagatcatcagaattagaaaatgaatgcctttgt |
9062627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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