View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12963_low_4 (Length: 396)
Name: NF12963_low_4
Description: NF12963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12963_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 44628313 - 44627957
Alignment:
| Q |
18 |
aaagcatactgattcaatctaaatacatgtgtagtgatcaaacatttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaa- |
116 |
Q |
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| T |
44628313 |
aaagcatactgattcaatctaaatacatgtgtagtgatcaaaggtttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaaa |
44628214 |
T |
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| Q |
117 |
caattaccaaagtcttcaatatgatcttgtcaaggtcagatcagagcaccatcataactcgatcaattatttaattccaagaagagatcatcctacaagc |
216 |
Q |
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| T |
44628213 |
caattaccaaagtcttcaatatgatcttgtcaaggtcaga-----gcaccatcataactcgatcaattatttaattccaagaagagatcatcctacaagc |
44628119 |
T |
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| Q |
217 |
aaaaatcatatcatatattatataaaccatagatgaaatagtaatttaaaatttaataggaaacagaacaatgtaaaattttttacaacttcaaagtaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
44628118 |
aaaaatcatatcatatattatataaaccatagatgaaatagtaatttaaaatttaataggaaacagaacaatgtacaaaattttacaacttcaaagtaaa |
44628019 |
T |
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| Q |
317 |
catattcaatagttagtaactcgatcatttacattttaaagtttgattaataaactaaatcc |
378 |
Q |
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| T |
44628018 |
catattcaatagttagtaactcaatcatttacattttaaagtttgattaataaactcaatcc |
44627957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 42388496 - 42388592
Alignment:
| Q |
22 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
117 |
Q |
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| T |
42388496 |
cataccgattcaatctaaa-acaagtgtagttatcacaagcatgtttcgttccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
42388592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 34597432 - 34597529
Alignment:
| Q |
22 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
117 |
Q |
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||||| ||||||||||||| ||| ||||||| |||| | ||| | |||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
34597432 |
cataccgattcaatctaaaaacaagtgtagttatcacaagcatgttttgttccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
34597529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 26081640 - 26081537
Alignment:
| Q |
28 |
gattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattccataacatgtccaatctaaaagaataaaaa-caattacc |
124 |
Q |
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||||||||||||| ||| || ||||||||| | ||||| |||||||| || |||||||||| ||||||||||||||||||||| ||||| |||||||| |
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| T |
26081640 |
gattcaatctaaaaacaagtttagtgatcacaagcattttttgttccaatggatttgattccttaacatgtccaatctaaaagacgaaaaaccaattacc |
26081541 |
T |
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| Q |
125 |
aaag |
128 |
Q |
| |
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|||| |
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|
| T |
26081540 |
aaag |
26081537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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