View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12963_low_9 (Length: 303)
Name: NF12963_low_9
Description: NF12963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12963_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 99 - 286
Target Start/End: Original strand, 47494011 - 47494198
Alignment:
| Q |
99 |
tagtgtaaataatcttttaaactcaaaaagagagttcatgattgattcaccttccattactacagtgaaaataggatgcattgtgttggaaacaatagga |
198 |
Q |
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| T |
47494011 |
tagtgtaaataatcttttaaactcaaaaagagagttcatgattgattcaccttccattactacagtgaaaataggatgcattgtgttggaaataatagga |
47494110 |
T |
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| Q |
199 |
cttggtgattcattgctgaactttttgatgaagtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaa |
286 |
Q |
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| T |
47494111 |
cttggtgattcattgctgaactttttgatgaagtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaa |
47494198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 47493896 - 47493989
Alignment:
| Q |
7 |
acatcatcatcatcaatgcaaaagatttagatgctactagtatcaatataacataatcatttgattattaaaaaatattagagtttaatcatta |
100 |
Q |
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| T |
47493896 |
acatcgtcatcatcaatgcaaaagatttagatgctactagtatcaatataacataatcatttgattattaaaaaatatttgagtttaatcatta |
47493989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 24221335 - 24221387
Alignment:
| Q |
223 |
ttgatgaagtaagaaaggaatgaaaagggagtgatgatacccatgttccaatc |
275 |
Q |
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| T |
24221335 |
ttgatgaagtaagaaaggaatgaaaagggagtgataatactcatgttccaatc |
24221387 |
T |
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