View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_high_12 (Length: 336)
Name: NF12964_high_12
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_high_12 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 905037 - 905372
Alignment:
| Q |
1 |
atacacatcatgaatnnnnnnncatacattgctatggttccttcccctggacttagccatttaattccacaagttgaatttgccaaacaattacttcaac |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905037 |
atacacatcatgaataaaaaaacatacattgctatggttccttcccctggacttagccatttaattccacaagttgaatttgccaaacaattacttcaac |
905136 |
T |
|
| Q |
101 |
aacacaatgaattcattgtcacattcctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacactcttccaccaaacatagaatt |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
905137 |
aacacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaacactcttcccccaaacatagaatt |
905236 |
T |
|
| Q |
201 |
cattgttcttcctcaagtaaaacaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905237 |
cattgttcttcctcaagtaaaacaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaa |
905336 |
T |
|
| Q |
301 |
gaagtaaaatcactcatttccaaacctaaccttgtt |
336 |
Q |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
905337 |
gaagtaaaatcactcatttccaaaactaaccttgtt |
905372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 27 - 336
Target Start/End: Complemental strand, 895577 - 895271
Alignment:
| Q |
27 |
cattgctatggttccttcccctggacttagccatttaattccacaagttgaatttgccaaacaattacttcaacaacacaatgaattcattgtcacattc |
126 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
895577 |
cattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcacattc |
895478 |
T |
|
| Q |
127 |
ctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacactcttccaccaaacatagaattcattgttcttcctcaagtaaaacacc |
226 |
Q |
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|||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| | |
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| T |
895477 |
atcattccaacactttctcctcttactccttcaatgcaacaagtcttgaacaatcttccaccaaacatagacttcattcttcttcctcaagtaaaaaata |
895378 |
T |
|
| Q |
227 |
ttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatcactcatttccaaacc |
326 |
Q |
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||| | | | | ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| | |
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| T |
895377 |
ttcaaca---aagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaac |
895281 |
T |
|
| Q |
327 |
taaccttgtt |
336 |
Q |
| |
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|||||||||| |
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| T |
895280 |
taaccttgtt |
895271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 27 - 336
Target Start/End: Original strand, 347 - 659
Alignment:
| Q |
27 |
cattgctatggttccttcccctggacttagccatttaattccacaagttgaatttgccaaacaattacttcaacaacacaatgaattcattgtcacattc |
126 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| |||| |||||| ||||| |||||||| | | | |||||||| |
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| T |
347 |
cattgctatggttccttcacctggattgagccatttgattccacaagttgagtttgcaaaactattactccaacatcacaatgagtaccatatcacattc |
446 |
T |
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| Q |
127 |
ctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacactcttccaccaaacatagaattcattgttcttcctcaagtaa------ |
220 |
Q |
| |
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|||||||| ||||||||||| || |||||||| ||| || | |||||||||| |||||||||||||| | |||| ||||||||| ||||| | |
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| T |
447 |
ctcattcccacacttggtccactaactccttccatgcaatcaatcttgaacacacttccaccaaacatgaacttcactgttcttccccaagtcaacattg |
546 |
T |
|
| Q |
221 |
aacaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatcactcatttc |
320 |
Q |
| |
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|| |||||||| | ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||| |||| |
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| T |
547 |
aagaccttccaca---taatcttgaaccttcaacacaaatgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttctttc |
643 |
T |
|
| Q |
321 |
caaacctaaccttgtt |
336 |
Q |
| |
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||| ||||||||||| |
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| T |
644 |
aaaaactaaccttgtt |
659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 27 - 336
Target Start/End: Original strand, 33256229 - 33256541
Alignment:
| Q |
27 |
cattgctatggttccttcccctggacttagccatttaattccacaagttgaatttgccaaacaattacttcaacaacacaatgaattcattgtcacattc |
126 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| |||| |||||| ||||| |||||||| | | | |||||||| |
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| T |
33256229 |
cattgctatggttccttcacctggattgagccatttgattccacaagttgagtttgcaaaactattactccaacatcacaatgagtaccatatcacattc |
33256328 |
T |
|
| Q |
127 |
ctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacactcttccaccaaacatagaattcattgttcttcctcaagtaa------ |
220 |
Q |
| |
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|||||||| ||||||||||| || |||||||| ||| || | |||||||||| |||||||||||||| | |||| ||||||||| ||||| | |
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| T |
33256329 |
ctcattcccacacttggtccactaactccttccatgcaatcaatcttgaacacacttccaccaaacatgaacttcactgttcttccccaagtcaacattg |
33256428 |
T |
|
| Q |
221 |
aacaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatcactcatttc |
320 |
Q |
| |
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|| |||||||| | ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||| |||| |
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| T |
33256429 |
aagaccttccaca---taatcttgaaccttcaacacaaatgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttctttc |
33256525 |
T |
|
| Q |
321 |
caaacctaaccttgtt |
336 |
Q |
| |
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||| ||||||||||| |
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| T |
33256526 |
aaaaactaaccttgtt |
33256541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 320
Target Start/End: Complemental strand, 8295526 - 8295230
Alignment:
| Q |
27 |
cattgctatggttccttcccctggacttagccatttaattccacaagttgaatttgccaaacaattacttcaacaacacaatgaattcattgtcacattc |
126 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||| ||||||| |||||| ||||| |||| |||||| ||| | |||||||||| | | |||||||| |
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|
| T |
8295526 |
cattgctatggttccttcacctggattgagccatttgattccactagttgagtttgctaaactattactccaaaatcacaatgaataccatatcacattc |
8295427 |
T |
|
| Q |
127 |
ctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacactcttccaccaaacatagaattcattgttcttcctcaagtaa------ |
220 |
Q |
| |
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|||||||| ||||||||||| || |||||||| ||| || ||||||||||||||||||||||||| | |||||||||||||| ||||| | |
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| T |
8295426 |
ctcattcccacacttggtccactaactccttccatgcaatccatcttgaacactcttccaccaaacatgaacttcattgttcttccccaagtcaacattg |
8295327 |
T |
|
| Q |
221 |
aacaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatcactcatttc |
320 |
Q |
| |
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|| |||||||| | ||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| | |||||||||||||||||| |||| |
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| T |
8295326 |
aagaccttccaca---taatcttgatcctgcaacacagatgaaactcatagtgaaacactctattccatttctttatgaagaagtaaaatcactcctttc |
8295230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 6440492 - 6440569
Alignment:
| Q |
103 |
cacaatgaattcattgtcacattcctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacact |
180 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||| | ||||| ||||||||| |
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| T |
6440492 |
cacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatgtagcaagtattgaacact |
6440569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 34765317 - 34765258
Alignment:
| Q |
103 |
cacaatgaattcattgtcacattcctcattccaacacttggtcctctcactccttcaatg |
162 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||| |
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|
| T |
34765317 |
cacaatgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatg |
34765258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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