View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_high_2 (Length: 704)
Name: NF12964_high_2
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 18 - 693
Target Start/End: Complemental strand, 28754001 - 28753326
Alignment:
| Q |
18 |
gatagcatattttggggatcaaacatttgcttggaatgacgcgtcaatgataaagccatttcataaacatttttctgaaatggagaaacagagtgacatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28754001 |
gatagcatattttggggatcaaacatttgcttggaatgacacgtcaatgataaagccatttcataaacatttttctgaaatggagaaacagagtgatatg |
28753902 |
T |
|
| Q |
118 |
gaaaatttccgccatgccgttgattgtgctttagaagaggcctcaagacgggttgagtttgtcctgtcttgtccttgtatgccgggagaaacgtatcctg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28753901 |
gaaaatttccgccatgccgttgattgtgctttagaagaggcctcaagacgggttgagtttgtcctgtcttgtccttgtatgcctggagaaacgtatcctg |
28753802 |
T |
|
| Q |
218 |
agctgaaaaagaaagtaattgctaacaatgcggcatcttttgaaccgatggaacttgtcaattttgttaaatcgttagcccaatctccacttactgaatt |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753801 |
agctgaaaacgaaagtaattgctaacaatgcggcatcttttgaaccgatggaacttgtcaattttgttaaatcgttagcccaatctccacttactgaatt |
28753702 |
T |
|
| Q |
318 |
tgatagattggattttgtaagtgcatgtgctcgattgtcagctttctatcgctcaaaaggctactctcaactgcctgaatttgcaatgcttgatcggttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753701 |
tgatagattggattttgtaagtgcatgtgctcgattgtcagctttctatcgctcaaaaggctactctcaactgcctgaatttgcaatgcttgatcggttg |
28753602 |
T |
|
| Q |
418 |
tttgagaatgatatggaaattctacttgtaagggagcatgagcagtgcgatgatcaaattaatgaacagcacatctcttggaatacgaagcagactggcn |
517 |
Q |
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| T |
28753601 |
tttgagaatgatatggaaattctacttgtaagggagcatgagcagtgcgatgatcaaattaatgaacagcacatctcttggaatacgaagcagactggca |
28753502 |
T |
|
| Q |
518 |
nnnnnnnnnnncttttgtcagatttaatgtctgaggagaacgtctggactgcaaatggtgaatgtacgccaaaaaagaaagctggtgatagttcaatttc |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
28753501 |
aaaagaaaaaacttttgtcagatttaatgtctgaggagaacgtctggactccaaatggtgaatgtataccaaaaaagaaagctggtggtagttcaatttc |
28753402 |
T |
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| Q |
618 |
acgacgtggcaggaaacggaaggcagcgtatgatacttcatatgattattttcatcattcccaaattgctgatgat |
693 |
Q |
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| T |
28753401 |
acgacgtggcaggaaacggaaggcagcgtatgatacttcatatgattattttcatcattcccaaattgctgatgat |
28753326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 44864800 - 44865264
Alignment:
| Q |
18 |
gatagcatattttggggatcaaacatttgcttggaatgacgcgtcaatgataaagccatttcataaacatttttctgaaatggagaaacagagtgacatg |
117 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| | |||||| ||||||||| ||| || |
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| T |
44864800 |
gatagcatattttggtgatcaaacatttgcttggaatgatgtgtcagtgataaagccatttcataaacatttcaccgaaatgaagaaacagaatgatttg |
44864899 |
T |
|
| Q |
118 |
gaaaatttccgccatgccgttgattgtgctttagaagaggcctcaagacgggttgagtttgtcctgtcttgtccttgtatgccgggagaaacgtatcctg |
217 |
Q |
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||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||| | |||||| || |||| |
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| T |
44864900 |
gaaaatttccgtcatgctgttgattgtgctttagaagaagcctcaagacgcgttgaatttggcctttcttgtccttgtatgaccggagaagtgtctccta |
44864999 |
T |
|
| Q |
218 |
agctgaaaaagaaagtaattgctaacaatgcggcatcttttgaaccgatggaacttgtcaattttgttaaatcgttagcccaatctccacttactgaatt |
317 |
Q |
| |
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||||| | | | || ||| ||||| |||||||||||||||||| | | |||||||||||||||| ||||| ||||| || || |||||||||||||| |
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| T |
44865000 |
agctggagacgcaattaacggctaatgctgcggcatcttttgaacctacgcaacttgtcaattttgtcaaatcattagctcagtcaccacttactgaatt |
44865099 |
T |
|
| Q |
318 |
tgatagattggattttgtaagtgcatgtgctcgattgtcagctttctatcgctcaaaaggctactctcaactgcctgaatttgcaatgcttgatcggttg |
417 |
Q |
| |
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||||||| | || ||||||||| | |||| | |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
44865100 |
tgatagactcgagtttgtaagttctcgtgcccaattgtcggctttctatcgctcaaaaggctattctcaactgcctgagtttgcaatgcttgatcggttg |
44865199 |
T |
|
| Q |
418 |
tttgagaatgatatggaaattctacttgtaagggagcatgagcagtgcgatgatcaaattaatga |
482 |
Q |
| |
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||||||| ||||||||||||||| | | |||||||| | ||||||||||||||||||||||||| |
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| T |
44865200 |
tttgagagtgatatggaaattctgcctataagggagaaacagcagtgcgatgatcaaattaatga |
44865264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 45247771 - 45247320
Alignment:
| Q |
18 |
gatagcatattttggggatcaaacatttgcttggaatgacgcgtcaatgataaagccatttcataaacatttttctgaaatggagaaacagagtgacatg |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || |||||||||||||||| || || |
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| T |
45247771 |
gatagcatattttggtgatcaaacatttgcttggaatgatgtgtcaatgataaagccatttcataaacatttctcccaaatggagaaacagagcgatttg |
45247672 |
T |
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| Q |
118 |
gaaaatttccgccatgccgttgattgtgctttagaagaggcctcaagacgggttgagtttgtcctgtcttgtccttgtatgccgggagaaacgtatcctg |
217 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||| ||| || || |||| |
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| T |
45247671 |
aaacatttccgccatgctgttgattgtgctttagaagaggcctccaggcacgttgagtttggcctgtcttgtccttgtatgcccggacaagcgcttccta |
45247572 |
T |
|
| Q |
218 |
agctgaaaaagaaagtaattgctaacaatgcggcatcttttgaaccgatggaacttgtcaattttgttaaatcgttagcccaatctccacttactgaatt |
317 |
Q |
| |
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|| | || |||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||| || || |||||||||||| |
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| T |
45247571 |
agttaaa------------tgctaatgatgcgacatcttttgaaccgacggaacttgtcaattttgttaaatcattagctcagtcctaacttactgaatt |
45247484 |
T |
|
| Q |
318 |
tgatagattggattttgtaagtgcatgtgctcgattgtcagctttctatcgctcaaaaggctactctcaactgcctgaatttgcaatgcttgatcggttg |
417 |
Q |
| |
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||||||| | || ||||||||||| |||| | |||||| || ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
45247483 |
tgatagactcgagtttgtaagtgctcgtgcccaattgtcggccttctatcgctcaaaaggctgttctcaactgcctgagtttgcaatgcttgatcggttg |
45247384 |
T |
|
| Q |
418 |
tttgagaatgatatggaaattctacttgtaagggagcatgagcagtgcgatgatcaaattaatg |
481 |
Q |
| |
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||||||||||||||||||||||||| || ||||||| | | |||||||||||||||||||||| |
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| T |
45247383 |
tttgagaatgatatggaaattctacctgaaagggagaaacaccagtgcgatgatcaaattaatg |
45247320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 529 - 693
Target Start/End: Original strand, 44865353 - 44865514
Alignment:
| Q |
529 |
cttttgtcagatttaatgtctgaggagaacgtctggactgcaaatggtgaatgtacgccaaaaaagaaagctggtgatagttcaatttcacgacgtggca |
628 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||| | ||| || ||||||| |||| ||||||| |||| ||||| |||||||||||| ||| | |
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| T |
44865353 |
cttttgtcagatttaatgtctgagaagaactcctggaatctaaagggcgaatgtatgccagaaaagaaggctgatgataattcaatttcacggtgtgcga |
44865452 |
T |
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| Q |
629 |
ggaaacggaaggcagcgtatgatacttcatatgattattttcatcattcccaaattgctgatgat |
693 |
Q |
| |
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|||||| ||||||||| | |||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
44865453 |
ggaaacagaaggcagctcacgatact---aatgaatatttccatcattcccaaattgctgatgat |
44865514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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