View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_high_3 (Length: 672)
Name: NF12964_high_3
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 20113537 - 20114001
Alignment:
| Q |
17 |
acattctcatccgctcatgcttctttcaaggtcgaacggatcgcgccttggaactgttcgatgaaatgcgcagaaccaatgtctgtcctgaccaggtcac |
116 |
Q |
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| T |
20113537 |
acattctcatccgctcatgcttctttcaaggtcgaacggatcgcgccttggaactgttcgatgaaatgcgcagaaccaatgtctgtcctgaccaggtcac |
20113636 |
T |
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| Q |
117 |
atttgggacgttaatccatggtctgtgtaaggattcgcggatgcatcaggcattccgaatgaaaaaattgatgattgaggaattcaagctgaaaccgtgt |
216 |
Q |
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| T |
20113637 |
atttgggacgttaatccacggtttgtgtaaggattcgcggatgcatcaggcgttcggaatgaaaaaattgatgatccaggaattcaagctgaagccatgt |
20113736 |
T |
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| Q |
217 |
gtttctgtttacactaacttgatgaaaggggtttgtgagattggggaacttcatcgggcatttgagatcaaggatgagatggagaggaatggattgagat |
316 |
Q |
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| T |
20113737 |
gtttctgtttacactaacttgatgaaaggggtttgtgagattggggaacttcatcgggcatttgagatcaaggatgagatggagaggaatggattgagat |
20113836 |
T |
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| Q |
317 |
tggatgtagttgtttataacactctggtcaatgcgctttttaaggcggggagaaaggaaaaggctttaagggttttggaggaaatgaaagagagtggtta |
416 |
Q |
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| T |
20113837 |
tggatgtagttgtttataacactctggtcaatgcgctttttaaggcggggagaaaggaagaggctttaagggttttggaggaaatgaaagagagtggtta |
20113936 |
T |
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| Q |
417 |
ccattggaattcagttacttgtaatgtaatgattggggagttttgtagacaaaagaatttccaag |
481 |
Q |
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| T |
20113937 |
ccattggaattcagttacttgtaatgtaatgattggggagttttgtagacaaaagaatttccaag |
20114001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 482 - 651
Target Start/End: Complemental strand, 20128324 - 20128155
Alignment:
| Q |
482 |
aagcttataggattttggatggggtggaaggtgtcaagcctgatgtttttggttacaatgtggtgattggttggttgtgtaaagaagggaaatggagtga |
581 |
Q |
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| T |
20128324 |
aagcttataggattttggatggggtggaaggtgtcaagcctgatgtttttggttacaatgtggtgattggttggttgtgtaaagtagggaaatggagtga |
20128225 |
T |
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| Q |
582 |
agcaaatgatcttgttcaggatatgccgcggagaaagtgtgttcccgatgttgtaacataccgtacgctg |
651 |
Q |
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| T |
20128224 |
agcaaatgatcttgttcaggatatgccgcggagaaagtgtgttcccgatgttgtaacataccgtacgctg |
20128155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 482 - 651
Target Start/End: Complemental strand, 20904116 - 20903947
Alignment:
| Q |
482 |
aagcttataggattttggatggggtggaaggtgtcaagcctgatgtttttggttacaatgtggtgattggttggttgtgtaaagaagggaaatggagtga |
581 |
Q |
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| T |
20904116 |
aagcttataggattttggatggggtggaaggtgtcaagcctgatgtttttggttacaatgtggtgattggttggttgtgtaaagtagggaaatggagtga |
20904017 |
T |
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| Q |
582 |
agcaaatgatcttgttcaggatatgccgcggagaaagtgtgttcccgatgttgtaacataccgtacgctg |
651 |
Q |
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| T |
20904016 |
agcaaatgatcttgttcaggatatgccgcggagaaagtgtgttcccgatgttgtaacataccgtacgctg |
20903947 |
T |
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