View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12964_high_4 (Length: 541)
Name: NF12964_high_4
Description: NF12964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12964_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 27099303 - 27098780
Alignment:
| Q |
1 |
aataataaataaaaacaatggaaggaggaggaatgttatcatcttcatcatcacattcacaaaactatatctacagagagtgtttaagaaaccatgcagc |
100 |
Q |
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| T |
27099303 |
aataataaataaaaacaatggaaggaggaggaatgttatcatcttcatcatcacattcacaaaactatatctacagagagtgtttaagaaaccatgcagc |
27099204 |
T |
|
| Q |
101 |
aagccttggaagctacgccaccgacggctgcggtgaattcaccatcgatgactcatcgccatccgcggtaaacagcctccaatgtgcagcctgcggctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099203 |
aagccttggaagctacgccaccgacggctgcggtgaattcaccatcgacgactcatcgccatccgcggtaaacagcctccaatgtgcagcctgcggctgt |
27099104 |
T |
|
| Q |
201 |
caccggaacttccaccgcaaaataaccgcgatcacaagggagagtgccgcggctgctgcaatgtcggatcagatgatggaatattccggtggaggaggta |
300 |
Q |
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| T |
27099103 |
caccggaacttccaccgcaaaataaccgcgatcacaagggagagtgccgcggctgctgcaatgtcggatcagatgatggaatattccggtggaggaggta |
27099004 |
T |
|
| Q |
301 |
gtggaagtgatgggaggaggaagaggtaccggacgaaatttacgccggatcagaaggagaagatgatgggatttgctgagaagttaggatggaaattgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099003 |
gtggaagtgatgggaggaggaagaggtaccggacgaaatttacgccggatcagaaggagaagatgatgggatttgctgagaagttaggatggaaattgca |
27098904 |
T |
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| Q |
401 |
gagaaaagaacttgatgaagagattgaaaggttttgtgaaagtgttggtgtgagtagacaagtttttaaggtttggatgcataatcataagaattcttgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27098903 |
gagaaaagaacttgatgaagagattgaaaggttttgtgaaagtgttggtgtgagtagacaagtttttaaggtttggatgcataatcataagaattcttgt |
27098804 |
T |
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| Q |
501 |
ttctcaaattcttctgatccttct |
524 |
Q |
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|||||||||||||||||||||||| |
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| T |
27098803 |
ttctcaaattcttctgatccttct |
27098780 |
T |
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